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LINC02546 (long intergenic non-protein coding RNA 2546)

Identity

Other alias-
HGNC (Hugo) LINC02546
LocusID (NCBI) 105376606
Atlas_Id 80363
Location 11p14.1  [Link to chromosome band 11p14]
Location_base_pair Starts at 29594413 and ends at 29630674 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02546   53581
Cards
Entrez_Gene (NCBI)LINC02546  105376606  long intergenic non-protein coding RNA 2546
Aliases
GeneCards (Weizmann)LINC02546
Ensembl hg19 (Hinxton)ENSG00000255117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255117 [Gene_View]  ENSG00000255117 [Sequence]  chr11:29594413-29630674 [Contig_View]  LINC02546 [Vega]
ICGC DataPortalENSG00000255117
TCGA cBioPortalLINC02546
AceView (NCBI)LINC02546
Genatlas (Paris)LINC02546
WikiGenes105376606
SOURCE (Princeton)LINC02546
Genetics Home Reference (NIH)LINC02546
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02546  -     chr11:29594413-29630674 +  11p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02546  -     11p14.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02546 - 11p14.1 [CytoView hg19]  LINC02546 - 11p14.1 [CytoView hg38]
ImmunoBaseENSG00000255117
Mapping of homologs : NCBILINC02546 [Mapview hg19]  LINC02546 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI806312 BX112242 DB449902 DB515213
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02546
Cluster EST : UnigeneHs.577275 [ NCBI ]
CGAP (NCI)Hs.577275
Alternative Splicing GalleryENSG00000255117
Gene ExpressionLINC02546 [ NCBI-GEO ]   LINC02546 [ EBI - ARRAY_EXPRESS ]   LINC02546 [ SEEK ]   LINC02546 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02546 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105376606
GTEX Portal (Tissue expression)LINC02546
Human Protein AtlasENSG00000255117-LINC02546 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02546
DMDM Disease mutations105376606
Blocks (Seattle)LINC02546
Human Protein Atlas [tissue]ENSG00000255117-LINC02546 [tissue]
Protein Interaction databases
FunCoupENSG00000255117
BioGRIDLINC02546
STRING (EMBL)LINC02546
ZODIACLINC02546
Ontologies - Pathways
Huge Navigator LINC02546 [HugePedia]
snp3D : Map Gene to Disease105376606
BioCentury BCIQLINC02546
ClinGenLINC02546
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105376606
Clinical trialLINC02546
Miscellaneous
canSAR (ICR)LINC02546 (select the gene name)
DataMed IndexLINC02546
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02546
EVEXLINC02546
GoPubMedLINC02546
iHOPLINC02546
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:39:04 CEST 2019

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