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LINC02548 (long intergenic non-protein coding RNA 2548)

Identity

Other alias-
HGNC (Hugo) LINC02548
LocusID (NCBI) 105376562
Atlas_Id 80452
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 13784386 and ends at 13848002 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02548   53583
Cards
Entrez_Gene (NCBI)LINC02548  105376562  long intergenic non-protein coding RNA 2548
Aliases
GeneCards (Weizmann)LINC02548
Ensembl hg19 (Hinxton)ENSG00000255411 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255411 [Gene_View]  ENSG00000255411 [Sequence]  chr11:13784386-13848002 [Contig_View]  LINC02548 [Vega]
ICGC DataPortalENSG00000255411
TCGA cBioPortalLINC02548
AceView (NCBI)LINC02548
Genatlas (Paris)LINC02548
WikiGenes105376562
SOURCE (Princeton)LINC02548
Genetics Home Reference (NIH)LINC02548
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02548  -     chr11:13784386-13848002 +  11p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02548  -     11p15.3   [Description]    (hg19-Feb_2009)
GoldenPathLINC02548 - 11p15.3 [CytoView hg19]  LINC02548 - 11p15.3 [CytoView hg38]
ImmunoBaseENSG00000255411
Mapping of homologs : NCBILINC02548 [Mapview hg19]  LINC02548 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA789240
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02548
Cluster EST : UnigeneHs.577257 [ NCBI ]
CGAP (NCI)Hs.577257
Alternative Splicing GalleryENSG00000255411
Gene ExpressionLINC02548 [ NCBI-GEO ]   LINC02548 [ EBI - ARRAY_EXPRESS ]   LINC02548 [ SEEK ]   LINC02548 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02548 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105376562
GTEX Portal (Tissue expression)LINC02548
Human Protein AtlasENSG00000255411-LINC02548 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02548
DMDM Disease mutations105376562
Blocks (Seattle)LINC02548
Human Protein Atlas [tissue]ENSG00000255411-LINC02548 [tissue]
Protein Interaction databases
FunCoupENSG00000255411
BioGRIDLINC02548
STRING (EMBL)LINC02548
ZODIACLINC02548
Ontologies - Pathways
Huge Navigator LINC02548 [HugePedia]
snp3D : Map Gene to Disease105376562
BioCentury BCIQLINC02548
ClinGenLINC02548
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105376562
Clinical trialLINC02548
Miscellaneous
canSAR (ICR)LINC02548 (select the gene name)
DataMed IndexLINC02548
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02548
EVEXLINC02548
GoPubMedLINC02548
iHOPLINC02548
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:39:05 CEST 2019

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