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LINC02550 (long intergenic non-protein coding RNA 2550)

Identity

Other alias-
HGNC (Hugo) LINC02550
LocusID (NCBI) 105369490
Atlas_Id 80393
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111091932 and ends at 111097318 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02550   53585
Cards
Entrez_Gene (NCBI)LINC02550  105369490  long intergenic non-protein coding RNA 2550
Aliases
GeneCards (Weizmann)LINC02550
Ensembl hg19 (Hinxton)ENSG00000271584 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271584 [Gene_View]  ENSG00000271584 [Sequence]  chr11:111091932-111097318 [Contig_View]  LINC02550 [Vega]
ICGC DataPortalENSG00000271584
TCGA cBioPortalLINC02550
AceView (NCBI)LINC02550
Genatlas (Paris)LINC02550
WikiGenes105369490
SOURCE (Princeton)LINC02550
Genetics Home Reference (NIH)LINC02550
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02550  -     chr11:111091932-111097318 -  11q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02550  -     11q23.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC02550 - 11q23.1 [CytoView hg19]  LINC02550 - 11q23.1 [CytoView hg38]
ImmunoBaseENSG00000271584
Mapping of homologs : NCBILINC02550 [Mapview hg19]  LINC02550 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW269967
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02550
Alternative Splicing GalleryENSG00000271584
Gene ExpressionLINC02550 [ NCBI-GEO ]   LINC02550 [ EBI - ARRAY_EXPRESS ]   LINC02550 [ SEEK ]   LINC02550 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02550 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105369490
GTEX Portal (Tissue expression)LINC02550
Human Protein AtlasENSG00000271584-LINC02550 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02550
DMDM Disease mutations105369490
Blocks (Seattle)LINC02550
Human Protein Atlas [tissue]ENSG00000271584-LINC02550 [tissue]
Protein Interaction databases
FunCoupENSG00000271584
BioGRIDLINC02550
STRING (EMBL)LINC02550
ZODIACLINC02550
Ontologies - Pathways
Huge Navigator LINC02550 [HugePedia]
snp3D : Map Gene to Disease105369490
BioCentury BCIQLINC02550
ClinGenLINC02550
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105369490
Clinical trialLINC02550
Miscellaneous
canSAR (ICR)LINC02550 (select the gene name)
DataMed IndexLINC02550
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02550
EVEXLINC02550
GoPubMedLINC02550
iHOPLINC02550
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:39:05 CEST 2019

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