Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC02571 (long intergenic non-protein coding RNA 2571)

Identity

Other alias-
HGNC (Hugo) LINC02571
LocusID (NCBI) 105375015
Atlas_Id 80465
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31293908 and ends at 31301637 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)LINC02571   53630
Cards
Entrez_Gene (NCBI)LINC02571  105375015  long intergenic non-protein coding RNA 2571
Aliases
GeneCards (Weizmann)LINC02571
Ensembl hg19 (Hinxton)ENSG00000256166 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256166 [Gene_View]  ENSG00000256166 [Sequence]  chr6:31293908-31301637 [Contig_View]  LINC02571 [Vega]
ICGC DataPortalENSG00000256166
TCGA cBioPortalLINC02571
AceView (NCBI)LINC02571
Genatlas (Paris)LINC02571
WikiGenes105375015
SOURCE (Princeton)LINC02571
Genetics Home Reference (NIH)LINC02571
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02571  -     chr6:31293908-31301637 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02571  -     6p21.33   [Description]    (hg19-Feb_2009)
GoldenPathLINC02571 - 6p21.33 [CytoView hg19]  LINC02571 - 6p21.33 [CytoView hg38]
ImmunoBaseENSG00000256166
Mapping of homologs : NCBILINC02571 [Mapview hg19]  LINC02571 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB336728
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)LINC02571
Cluster EST : UnigeneHs.691349 [ NCBI ]
CGAP (NCI)Hs.691349
Alternative Splicing GalleryENSG00000256166
Gene ExpressionLINC02571 [ NCBI-GEO ]   LINC02571 [ EBI - ARRAY_EXPRESS ]   LINC02571 [ SEEK ]   LINC02571 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02571 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105375015
GTEX Portal (Tissue expression)LINC02571
Human Protein AtlasENSG00000256166-LINC02571 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02571
DMDM Disease mutations105375015
Blocks (Seattle)LINC02571
Human Protein Atlas [tissue]ENSG00000256166-LINC02571 [tissue]
Protein Interaction databases
FunCoupENSG00000256166
BioGRIDLINC02571
STRING (EMBL)LINC02571
ZODIACLINC02571
Ontologies - Pathways
Huge Navigator LINC02571 [HugePedia]
snp3D : Map Gene to Disease105375015
BioCentury BCIQLINC02571
ClinGenLINC02571
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105375015
Clinical trialLINC02571
Miscellaneous
canSAR (ICR)LINC02571 (select the gene name)
DataMed IndexLINC02571
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02571
EVEXLINC02571
GoPubMedLINC02571
iHOPLINC02571
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:39:08 CEST 2019
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