Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC02601 (long intergenic non-protein coding RNA 2601)

Identity

Other alias-
HGNC (Hugo) LINC02601
LocusID (NCBI) 105373185
Atlas_Id 80266
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 41275739 and ends at 41276777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC02601   53966
Cards
Entrez_Gene (NCBI)LINC02601  105373185  long intergenic non-protein coding RNA 2601
Aliases
GeneCards (Weizmann)LINC02601
Ensembl hg19 (Hinxton)ENSG00000223714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223714 [Gene_View]  ENSG00000223714 [Sequence]  chrX:41275739-41276777 [Contig_View]  LINC02601 [Vega]
ICGC DataPortalENSG00000223714
TCGA cBioPortalLINC02601
AceView (NCBI)LINC02601
Genatlas (Paris)LINC02601
WikiGenes105373185
SOURCE (Princeton)LINC02601
Genetics Home Reference (NIH)LINC02601
Genomic and cartography
GoldenPath hg38 (UCSC)LINC02601  -     chrX:41275739-41276777 +  Xp11.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC02601  -     Xp11.4   [Description]    (hg19-Feb_2009)
GoldenPathLINC02601 - Xp11.4 [CytoView hg19]  LINC02601 - Xp11.4 [CytoView hg38]
ImmunoBaseENSG00000223714
Mapping of homologs : NCBILINC02601 [Mapview hg19]  LINC02601 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE613553 CA944785
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC02601
Cluster EST : UnigeneHs.546119 [ NCBI ]
CGAP (NCI)Hs.546119
Alternative Splicing GalleryENSG00000223714
Gene ExpressionLINC02601 [ NCBI-GEO ]   LINC02601 [ EBI - ARRAY_EXPRESS ]   LINC02601 [ SEEK ]   LINC02601 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC02601 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105373185
GTEX Portal (Tissue expression)LINC02601
Human Protein AtlasENSG00000223714-LINC02601 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC02601
DMDM Disease mutations105373185
Blocks (Seattle)LINC02601
Human Protein Atlas [tissue]ENSG00000223714-LINC02601 [tissue]
Protein Interaction databases
FunCoupENSG00000223714
BioGRIDLINC02601
STRING (EMBL)LINC02601
ZODIACLINC02601
Ontologies - Pathways
Huge Navigator LINC02601 [HugePedia]
snp3D : Map Gene to Disease105373185
BioCentury BCIQLINC02601
ClinGenLINC02601
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373185
Clinical trialLINC02601
Miscellaneous
canSAR (ICR)LINC02601 (select the gene name)
DataMed IndexLINC02601
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC02601
EVEXLINC02601
GoPubMedLINC02601
iHOPLINC02601
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:39:12 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.