Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINS1 (lines homolog 1)

Identity

Alias_namesLINS
lines homolog 1 (Drosophila)
lines homolog (Drosophila)
Alias_symbol (synonym)WINS1
Other aliasMRT27
HGNC (Hugo) LINS1
LocusID (NCBI) 55180
Atlas_Id 77739
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 100569223 and ends at 100602240 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LINS1 (15q26.3) / LINS1 (15q26.3)LINS1 (15q26.3) / RQCD1 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LINS1   30922
Cards
Entrez_Gene (NCBI)LINS1  55180  lines homolog 1
AliasesLINS; MRT27; WINS1
GeneCards (Weizmann)LINS1
Ensembl hg19 (Hinxton)ENSG00000140471 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140471 [Gene_View]  ENSG00000140471 [Sequence]  chr15:100569223-100602240 [Contig_View]  LINS1 [Vega]
ICGC DataPortalENSG00000140471
TCGA cBioPortalLINS1
AceView (NCBI)LINS1
Genatlas (Paris)LINS1
WikiGenes55180
SOURCE (Princeton)LINS1
Genetics Home Reference (NIH)LINS1
Genomic and cartography
GoldenPath hg38 (UCSC)LINS1  -     chr15:100569223-100602240 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINS1  -     15q26.3   [Description]    (hg19-Feb_2009)
GoldenPathLINS1 - 15q26.3 [CytoView hg19]  LINS1 - 15q26.3 [CytoView hg38]
ImmunoBaseENSG00000140471
Mapping of homologs : NCBILINS1 [Mapview hg19]  LINS1 [Mapview hg38]
OMIM610350   614340   
Gene and transcription
Genbank (Entrez)AB083157 AI301298 AK001445 AK093868 AK095448
RefSeq transcript (Entrez)NM_001040614 NM_001040615 NM_001040616 NM_001352507 NM_001352508 NM_018148 NM_181739 NM_181740
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINS1
Cluster EST : UnigeneHs.105633 [ NCBI ]
CGAP (NCI)Hs.105633
Alternative Splicing GalleryENSG00000140471
Gene ExpressionLINS1 [ NCBI-GEO ]   LINS1 [ EBI - ARRAY_EXPRESS ]   LINS1 [ SEEK ]   LINS1 [ MEM ]
Gene Expression Viewer (FireBrowse)LINS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55180
GTEX Portal (Tissue expression)LINS1
Human Protein AtlasENSG00000140471-LINS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG48   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG48  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG48
Splice isoforms : SwissVarQ8NG48
PhosPhoSitePlusQ8NG48
Domains : Interpro (EBI)Lines_C    LINES_N    Protein_Lines   
Domain families : Pfam (Sanger)LINES_C (PF14695)    LINES_N (PF14694)   
Domain families : Pfam (NCBI)pfam14695    pfam14694   
Conserved Domain (NCBI)LINS1
DMDM Disease mutations55180
Blocks (Seattle)LINS1
SuperfamilyQ8NG48
Human Protein Atlas [tissue]ENSG00000140471-LINS1 [tissue]
Peptide AtlasQ8NG48
HPRD17280
IPIIPI00168910   IPI00332250   IPI00884921   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG48
IntAct (EBI)Q8NG48
FunCoupENSG00000140471
BioGRIDLINS1
STRING (EMBL)LINS1
ZODIACLINS1
Ontologies - Pathways
QuickGOQ8NG48
Ontology : AmiGOcognition  
Ontology : EGO-EBIcognition  
NDEx NetworkLINS1
Atlas of Cancer Signalling NetworkLINS1
Wikipedia pathwaysLINS1
Orthology - Evolution
OrthoDB55180
GeneTree (enSembl)ENSG00000140471
Phylogenetic Trees/Animal Genes : TreeFamLINS1
HOGENOMQ8NG48
Homologs : HomoloGeneLINS1
Homology/Alignments : Family Browser (UCSC)LINS1
Gene fusions - Rearrangements
Fusion : QuiverLINS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINS1
dbVarLINS1
ClinVarLINS1
1000_GenomesLINS1 
Exome Variant ServerLINS1
ExAC (Exome Aggregation Consortium)ENSG00000140471
GNOMAD BrowserENSG00000140471
Varsome BrowserLINS1
Genetic variants : HAPMAP55180
Genomic Variants (DGV)LINS1 [DGVbeta]
DECIPHERLINS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINS1 
Mutations
ICGC Data PortalLINS1 
TCGA Data PortalLINS1 
Broad Tumor PortalLINS1
OASIS PortalLINS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINS1
BioMutasearch LINS1
DgiDB (Drug Gene Interaction Database)LINS1
DoCM (Curated mutations)LINS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINS1 (select a term)
intoGenLINS1
Cancer3DLINS1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610350    614340   
Orphanet11804   
DisGeNETLINS1
MedgenLINS1
Genetic Testing Registry LINS1
NextProtQ8NG48 [Medical]
TSGene55180
GENETestsLINS1
Target ValidationLINS1
Huge Navigator LINS1 [HugePedia]
snp3D : Map Gene to Disease55180
BioCentury BCIQLINS1
ClinGenLINS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55180
Chemical/Pharm GKB GenePA142671544
Clinical trialLINS1
Miscellaneous
canSAR (ICR)LINS1 (select the gene name)
DataMed IndexLINS1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINS1
EVEXLINS1
GoPubMedLINS1
iHOPLINS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:39:14 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.