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LIX1L (limb and CNS expressed 1 like)

Identity

Alias (NCBI)-
HGNC (Hugo) LIX1L
HGNC Alias symbMGC46719
HGNC Previous nameLix1 homolog (mouse) like
 Lix1 homolog (chicken)-like
 Lix1 homolog (chicken) like
LocusID (NCBI) 128077
Atlas_Id 56125
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145933423 and ends at 145958017 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UAP1 (1q23.3) / LIX1L (1q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;1)(q21;q23) UAP1/LIX1L


External links

Nomenclature
HGNC (Hugo)LIX1L   28715
Cards
Entrez_Gene (NCBI)LIX1L    limb and CNS expressed 1 like
Aliases
GeneCards (Weizmann)LIX1L
Ensembl hg19 (Hinxton)ENSG00000271601 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000271601 [Gene_View]  ENSG00000271601 [Sequence]  chr1:145933423-145958017 [Contig_View]  LIX1L [Vega]
ICGC DataPortalENSG00000271601
TCGA cBioPortalLIX1L
AceView (NCBI)LIX1L
Genatlas (Paris)LIX1L
SOURCE (Princeton)LIX1L
Genetics Home Reference (NIH)LIX1L
Genomic and cartography
GoldenPath hg38 (UCSC)LIX1L  -     chr1:145933423-145958017 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIX1L  -     1q21.1   [Description]    (hg19-Feb_2009)
GoldenPathLIX1L - 1q21.1 [CytoView hg19]  LIX1L - 1q21.1 [CytoView hg38]
ImmunoBaseENSG00000271601
genome Data Viewer NCBILIX1L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK123675 AK128733 BC035727 CR627381
RefSeq transcript (Entrez)NM_153713
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIX1L
Alternative Splicing GalleryENSG00000271601
Gene ExpressionLIX1L [ NCBI-GEO ]   LIX1L [ EBI - ARRAY_EXPRESS ]   LIX1L [ SEEK ]   LIX1L [ MEM ]
Gene Expression Viewer (FireBrowse)LIX1L [ Firebrowse - Broad ]
GenevisibleExpression of LIX1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128077
GTEX Portal (Tissue expression)LIX1L
Human Protein AtlasENSG00000271601-LIX1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVB5
Splice isoforms : SwissVarQ8IVB5
PhosPhoSitePlusQ8IVB5
Domains : Interpro (EBI)LIX1   
Domain families : Pfam (Sanger)LIX1 (PF14954)   
Domain families : Pfam (NCBI)pfam14954   
Conserved Domain (NCBI)LIX1L
Blocks (Seattle)LIX1L
SuperfamilyQ8IVB5
Human Protein Atlas [tissue]ENSG00000271601-LIX1L [tissue]
Peptide AtlasQ8IVB5
HPRD14653
IPIIPI00216973   IPI00902947   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVB5
IntAct (EBI)Q8IVB5
BioGRIDLIX1L
STRING (EMBL)LIX1L
ZODIACLIX1L
Ontologies - Pathways
QuickGOQ8IVB5
Ontology : AmiGOmolecular_function  cellular_component  cytoplasm  autophagy  biological_process  autophagosome maturation  
Ontology : EGO-EBImolecular_function  cellular_component  cytoplasm  autophagy  biological_process  autophagosome maturation  
NDEx NetworkLIX1L
Atlas of Cancer Signalling NetworkLIX1L
Wikipedia pathwaysLIX1L
Orthology - Evolution
OrthoDB128077
GeneTree (enSembl)ENSG00000271601
Phylogenetic Trees/Animal Genes : TreeFamLIX1L
HOGENOMQ8IVB5
Homologs : HomoloGeneLIX1L
Homology/Alignments : Family Browser (UCSC)LIX1L
Gene fusions - Rearrangements
Fusion : QuiverLIX1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIX1L [hg38]
dbVarLIX1L
ClinVarLIX1L
MonarchLIX1L
1000_GenomesLIX1L 
Exome Variant ServerLIX1L
GNOMAD BrowserENSG00000271601
Varsome BrowserLIX1L
Genomic Variants (DGV)LIX1L [DGVbeta]
DECIPHERLIX1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIX1L 
Mutations
ICGC Data PortalLIX1L 
TCGA Data PortalLIX1L 
Broad Tumor PortalLIX1L
OASIS PortalLIX1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIX1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DLIX1L
Mutations and Diseases : HGMDLIX1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIX1L
DgiDB (Drug Gene Interaction Database)LIX1L
DoCM (Curated mutations)LIX1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIX1L (select a term)
intoGenLIX1L
Cancer3DLIX1L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLIX1L
MedgenLIX1L
Genetic Testing Registry LIX1L
NextProtQ8IVB5 [Medical]
GENETestsLIX1L
Target ValidationLIX1L
Huge Navigator LIX1L [HugePedia]
ClinGenLIX1L
Clinical trials, drugs, therapy
MyCancerGenomeLIX1L
Protein Interactions : CTD
Pharm GKB GenePA134915428
PharosQ8IVB5
Clinical trialLIX1L
Miscellaneous
canSAR (ICR)LIX1L (select the gene name)
HarmonizomeLIX1L
DataMed IndexLIX1L
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLIX1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:22:41 CET 2021

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