Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LOC100132057 (phosphodiesterase 4D interacting protein pseudogene)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100132057
Atlas_Id 66529
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 148402483 and ends at 148432545 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC100132057  100132057  phosphodiesterase 4D interacting protein pseudogene
Aliases
GeneCards (Weizmann)LOC100132057
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr1:148402483-148432545 [Contig_View]  LOC100132057 [Vega]
TCGA cBioPortalLOC100132057
AceView (NCBI)LOC100132057
Genatlas (Paris)LOC100132057
WikiGenes100132057
SOURCE (Princeton)LOC100132057
Genetics Home Reference (NIH)LOC100132057
Genomic and cartography
GoldenPath hg38 (UCSC)LOC100132057  -     chr1:148402483-148432545 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC100132057  -     1q21.2   [Description]    (hg19-Feb_2009)
GoldenPathLOC100132057 - 1q21.2 [CytoView hg19]  LOC100132057 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBILOC100132057 [Mapview hg19]  LOC100132057 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311108 BX464027 BX464028 DB107560 DB343069
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC100132057
Gene ExpressionLOC100132057 [ NCBI-GEO ]   LOC100132057 [ EBI - ARRAY_EXPRESS ]   LOC100132057 [ SEEK ]   LOC100132057 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC100132057 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100132057
GTEX Portal (Tissue expression)LOC100132057
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC100132057
DMDM Disease mutations100132057
Blocks (Seattle)LOC100132057
Protein Interaction databases
BioGRIDLOC100132057
STRING (EMBL)LOC100132057
ZODIACLOC100132057
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100132057
BioCentury BCIQLOC100132057
ClinGenLOC100132057
Clinical trials, drugs, therapy
Protein Interactions : CTD100132057
Clinical trialLOC100132057
Miscellaneous
canSAR (ICR)LOC100132057 (select the gene name)
HarmonizomeLOC100132057
DataMed IndexLOC100132057
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC100132057
EVEXLOC100132057
GoPubMedLOC100132057
iHOPLOC100132057
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Jun 30 19:47:34 CEST 2020
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