Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LOC105379194 (uncharacterized LOC105379194)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 105379194
Atlas_Id 78183
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 138744430 and ends at 138753924 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC105379194  105379194  uncharacterized LOC105379194
Aliases
GeneCards (Weizmann)LOC105379194
Ensembl hg19 (Hinxton)ENSG00000253404 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253404 [Gene_View]  ENSG00000253404 [Sequence]  chr5:138744430-138753924 [Contig_View]  LOC105379194 [Vega]
ICGC DataPortalENSG00000253404
TCGA cBioPortalLOC105379194
AceView (NCBI)LOC105379194
Genatlas (Paris)LOC105379194
WikiGenes105379194
SOURCE (Princeton)LOC105379194
Genetics Home Reference (NIH)LOC105379194
Genomic and cartography
GoldenPath hg38 (UCSC)LOC105379194  -     chr5:138744430-138753924 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC105379194  -     5q31.2   [Description]    (hg19-Feb_2009)
GoldenPathLOC105379194 - 5q31.2 [CytoView hg19]  LOC105379194 - 5q31.2 [CytoView hg38]
ImmunoBaseENSG00000253404
Mapping of homologs : NCBILOC105379194 [Mapview hg19]  LOC105379194 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI792600 HY038745 HY224594
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC105379194
Cluster EST : UnigeneHs.445981 [ NCBI ]
CGAP (NCI)Hs.445981
Alternative Splicing GalleryENSG00000253404
Gene ExpressionLOC105379194 [ NCBI-GEO ]   LOC105379194 [ EBI - ARRAY_EXPRESS ]   LOC105379194 [ SEEK ]   LOC105379194 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC105379194 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105379194
GTEX Portal (Tissue expression)LOC105379194
Human Protein AtlasENSG00000253404-LOC105379194 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC105379194
DMDM Disease mutations105379194
Blocks (Seattle)LOC105379194
Human Protein Atlas [tissue]ENSG00000253404-LOC105379194 [tissue]
Protein Interaction databases
FunCoupENSG00000253404
BioGRIDLOC105379194
STRING (EMBL)LOC105379194
ZODIACLOC105379194
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease105379194
BioCentury BCIQLOC105379194
ClinGenLOC105379194
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105379194
Clinical trialLOC105379194
Miscellaneous
canSAR (ICR)LOC105379194 (select the gene name)
DataMed IndexLOC105379194
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC105379194
EVEXLOC105379194
GoPubMedLOC105379194
iHOPLOC105379194
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:48:03 CEST 2019

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