Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LOC112577516 (carbohydrate-binding protein AQN-1-like)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 112577516
Atlas_Id 80271
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 122672882 and ends at 122679048 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)LOC112577516  112577516  carbohydrate-binding protein AQN-1-like
Aliases
GeneCards (Weizmann)LOC112577516
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:122672882-122679048 [Contig_View]  LOC112577516 [Vega]
TCGA cBioPortalLOC112577516
AceView (NCBI)LOC112577516
Genatlas (Paris)LOC112577516
WikiGenes112577516
SOURCE (Princeton)LOC112577516
Genetics Home Reference (NIH)LOC112577516
Genomic and cartography
GoldenPath hg38 (UCSC)LOC112577516  -     chr10:122672882-122679048 +  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LOC112577516  -     10q26.13   [Description]    (hg19-Feb_2009)
GoldenPathLOC112577516 - 10q26.13 [CytoView hg19]  LOC112577516 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBILOC112577516 [Mapview hg19]  LOC112577516 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001364461
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LOC112577516
Gene ExpressionLOC112577516 [ NCBI-GEO ]   LOC112577516 [ EBI - ARRAY_EXPRESS ]   LOC112577516 [ SEEK ]   LOC112577516 [ MEM ]
Gene Expression Viewer (FireBrowse)LOC112577516 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)112577516
GTEX Portal (Tissue expression)LOC112577516
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LOC112577516
DMDM Disease mutations112577516
Blocks (Seattle)LOC112577516
Protein Interaction databases
BioGRIDLOC112577516
STRING (EMBL)LOC112577516
ZODIACLOC112577516
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease112577516
BioCentury BCIQLOC112577516
ClinGenLOC112577516
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112577516
Clinical trialLOC112577516
Miscellaneous
canSAR (ICR)LOC112577516 (select the gene name)
DataMed IndexLOC112577516
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLOC112577516
EVEXLOC112577516
GoPubMedLOC112577516
iHOPLOC112577516
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:48:20 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.