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LPAR6 (lysophosphatidic acid receptor 6)

Identity

Other namesARWH1
LAH3
P2RY5
P2Y5
HGNC (Hugo) LPAR6
LocusID (NCBI) 10161
Location 13q14.2
Location_base_pair Starts at 48985182 and ends at 49001043 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)LPAR6   15520
Entrez_Gene (NCBI)LPAR6  10161  lysophosphatidic acid receptor 6
Cards
GeneCards (Weizmann)LPAR6
Ensembl (Hinxton)ENSG00000139679 [Gene_View]  chr13:48985182-49001043 [Contig_View]  LPAR6 [Vega]
AceView (NCBI)LPAR6
Genatlas (Paris)LPAR6
SOURCE (Stanford)NM_001162497 NM_001162498 NM_005767
Genomic and cartography
GoldenPath (UCSC)LPAR6  -  13q14.2   chr13:48985182-49001043 -  13q14.2   [Description]    (hg19-Feb_2009)
EnsemblLPAR6 - 13q14.2 [CytoView]
Mapping of homologs : NCBILPAR6 [Mapview]
OMIM278150   609239   611452   
Gene and transcription
Genbank (Entrez)AF000546 AK122856 AK123059 AK223389 BC039373
RefSeq transcript (SRS)NM_001162497 NM_001162498 NM_005767
RefSeq transcript (Entrez)NM_001162497 NM_001162498 NM_005767
RefSeq genomic (SRS)AC_000145 NC_000013 NC_018924 NG_012874 NT_024524 NW_001838074 NW_004078077
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NG_012874 NT_024524 NW_001838074 NW_004078077
Consensus coding sequences : CCDS (NCBI)LPAR6
Cluster EST : UnigeneHs.123464 [ SRS ] Hs.123464 [ NCBI ]
CGAP (NCI)Hs.123464
Alternative Splicing : Fast-db (Paris)GSHG0008484
Alternative Splicing GalleryENSG00000139679
Gene ExpressionLPAR6 [ NCBI-GEO ]   LPAR6 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43657 (SRS) P43657 (Uniprot)
NextProtP43657
With graphics : InterProP43657
Splice isoforms : SwissVarP43657(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (SRS)7TM_GPCR_Rhodpsn    GPCR_Rhodpsn_supfam    P2Y5_purnocptor   
Domains : Interpro (EBI)7TM_GPCR_Rhodpsn    GPCR_Rhodpsn_supfam    P2Y5_purnocptor   
Related proteins : CluSTrP43657
Domain families : Pfam (SRS)7tm_1 (PF00001)   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM10161
Blocks (Seattle)P43657
Human Protein AtlasENSG00000139679
HPRD16465
IPIIPI00019955   
Protein Interaction databases
DIP (DOE-UCLA)P43657
IntAct (EBI)P43657
FunCoupENSG00000139679
REACTOMELPAR6
Protein Interaction Database10161
BioGRIDLPAR6
InParanoidP43657
Interologous Interaction database P43657
IntegromeDBLPAR6
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LPAR6
SNP (GeneSNP Utah)LPAR6
SNP : HGBaseLPAR6
Genetic variants : HAPMAPLPAR6
Somatic Mutations in Cancer : COSMICLPAR6 
CONAN: Copy Number AnalysisLPAR6 
Mutations and Diseases : HGMDLPAR6
OMIM278150    609239    611452   
GENETests278150    609239    611452   
Disease Genetic AssociationLPAR6
Huge Navigator LPAR6 [HugePedia]  LPAR6 [HugeCancerGEM]
Genomic VariantsLPAR6  LPAR6 [DGVbeta]
snp3D : Map Gene to Disease10161
General knowledge
Homologs : HomoloGeneLPAR6
Homology/Alignments : Family Browser (UCSC)LPAR6
Phylogenetic Trees/Animal Genes : TreeFamLPAR6
Chemical/Protein Interactions : CTD10161
Chemical/Pharm GKB GenePA165505129
Clinical trialLPAR6
Cancer Resource (Charite)ENSG00000139679
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  integral to membrane  G-protein coupled purinergic nucleotide receptor activity  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  plasma membrane  G-protein coupled receptor signaling pathway  integral to membrane  G-protein coupled purinergic nucleotide receptor activity  
Pathways : KEGGNeuroactive ligand-receptor interaction
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
PubGeneLPAR6
iHOPLPAR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:24:55 CEST 2013
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