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LRRC3-DT (LRRC3 divergent transcript)

Identity

Alias (NCBI)LRRC3-AS1
HGNC (Hugo) LRRC3-DT
LocusID (NCBI) 100861510
Atlas_Id 80643
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44450986 and ends at 44455284 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LRRC3-DT   43636
Cards
Entrez_Gene (NCBI)LRRC3-DT  100861510  LRRC3 divergent transcript
AliasesLRRC3-AS1
GeneCards (Weizmann)LRRC3-DT
Ensembl hg19 (Hinxton)ENSG00000229356 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229356 [Gene_View]  ENSG00000229356 [Sequence]  chr21:44450986-44455284 [Contig_View]  LRRC3-DT [Vega]
ICGC DataPortalENSG00000229356
TCGA cBioPortalLRRC3-DT
AceView (NCBI)LRRC3-DT
Genatlas (Paris)LRRC3-DT
WikiGenes100861510
SOURCE (Princeton)LRRC3-DT
Genetics Home Reference (NIH)LRRC3-DT
Genomic and cartography
GoldenPath hg38 (UCSC)LRRC3-DT  -     chr21:44450986-44455284 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LRRC3-DT  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathLRRC3-DT - 21q22.3 [CytoView hg19]  LRRC3-DT - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000229356
genome Data Viewer NCBILRRC3-DT [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA725743 BM664107 BM703952
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LRRC3-DT
Alternative Splicing GalleryENSG00000229356
Gene ExpressionLRRC3-DT [ NCBI-GEO ]   LRRC3-DT [ EBI - ARRAY_EXPRESS ]   LRRC3-DT [ SEEK ]   LRRC3-DT [ MEM ]
Gene Expression Viewer (FireBrowse)LRRC3-DT [ Firebrowse - Broad ]
GenevisibleExpression of LRRC3-DT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100861510
GTEX Portal (Tissue expression)LRRC3-DT
Human Protein AtlasENSG00000229356-LRRC3-DT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LRRC3-DT
DMDM Disease mutations100861510
Blocks (Seattle)LRRC3-DT
Human Protein Atlas [tissue]ENSG00000229356-LRRC3-DT [tissue]
Protein Interaction databases
FunCoupENSG00000229356
BioGRIDLRRC3-DT
STRING (EMBL)LRRC3-DT
ZODIACLRRC3-DT
Ontologies - Pathways
Huge Navigator LRRC3-DT [HugePedia]
snp3D : Map Gene to Disease100861510
BioCentury BCIQLRRC3-DT
ClinGenLRRC3-DT
Clinical trials, drugs, therapy
Protein Interactions : CTD100861510
Clinical trialLRRC3-DT
Miscellaneous
canSAR (ICR)LRRC3-DT (select the gene name)
HarmonizomeLRRC3-DT
DataMed IndexLRRC3-DT
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLRRC3-DT
EVEXLRRC3-DT
GoPubMedLRRC3-DT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:12:44 CEST 2020

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