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LY75 (lymphocyte antigen 75)

Identity

Other namesCD205
CLEC13B
DEC-205
GP200-MR6
LY-75
HGNC (Hugo) LY75
LocusID (NCBI) 4065
Atlas_Id 45578
Location 2q24.2
Location_base_pair Starts at 160659868 and ends at 160761267 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LY75   6729
Cards
Entrez_Gene (NCBI)LY75  4065  lymphocyte antigen 75
GeneCards (Weizmann)LY75
Ensembl hg19 (Hinxton)ENSG00000054219 [Gene_View]  chr2:160659868-160761267 [Contig_View]  LY75 [Vega]
Ensembl hg38 (Hinxton)ENSG00000054219 [Gene_View]  chr2:160659868-160761267 [Contig_View]  LY75 [Vega]
ICGC DataPortalENSG00000054219
TCGA cBioPortalLY75
AceView (NCBI)LY75
Genatlas (Paris)LY75
WikiGenes4065
SOURCE (Princeton)LY75
Genomic and cartography
GoldenPath hg19 (UCSC)LY75  -     chr2:160659868-160761267 -  2q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LY75  -     2q24.2   [Description]    (hg38-Dec_2013)
EnsemblLY75 - 2q24.2 [CytoView hg19]  LY75 - 2q24.2 [CytoView hg38]
Mapping of homologs : NCBILY75 [Mapview hg19]  LY75 [Mapview hg38]
OMIM604524   
Gene and transcription
Genbank (Entrez)AA279177 AB208915 AF011333 AF064827 AK310678
RefSeq transcript (Entrez)NM_002349
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)LY75
Cluster EST : UnigeneHs.153563 [ NCBI ]
CGAP (NCI)Hs.153563
Alternative Splicing : Fast-db (Paris)GSHG0018091
Alternative Splicing GalleryENSG00000054219
Gene ExpressionLY75 [ NCBI-GEO ]   LY75 [ EBI - ARRAY_EXPRESS ]   LY75 [ SEEK ]   LY75 [ MEM ]
Gene Expression Viewer (FireBrowse)LY75 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)4065
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60449 (Uniprot)
NextProtO60449  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60449
Splice isoforms : SwissVarO60449 (Swissvar)
PhosPhoSitePlusO60449
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)    FN2_1 (PS00023)    FN2_2 (PS51092)    RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_CS    C-type_lectin_fold    FN_type2_col-bd    Kringle-like    Ricin_B_lectin   
Domain families : Pfam (Sanger)fn2 (PF00040)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00040    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  FN2 (SM00059)  RICIN (SM00458)  
DMDM Disease mutations4065
Blocks (Seattle)LY75
SuperfamilyO60449
Human Protein AtlasENSG00000054219
Peptide AtlasO60449
HPRD05161
IPIIPI00027381   IPI00789911   IPI00789398   
Protein Interaction databases
DIP (DOE-UCLA)O60449
IntAct (EBI)O60449
FunCoupENSG00000054219
BioGRIDLY75
STRING (EMBL)LY75
ZODIACLY75
Ontologies - Pathways
QuickGOO60449
Ontology : AmiGOreceptor activity  protein binding  integral component of plasma membrane  endocytosis  inflammatory response  immune response  carbohydrate binding  extracellular exosome  
Ontology : EGO-EBIreceptor activity  protein binding  integral component of plasma membrane  endocytosis  inflammatory response  immune response  carbohydrate binding  extracellular exosome  
NDEx Network
Atlas of Cancer Signalling NetworkLY75
Wikipedia pathwaysLY75
Orthology - Evolution
OrthoDB4065
GeneTree (enSembl)ENSG00000054219
Phylogenetic Trees/Animal Genes : TreeFamLY75
Homologs : HomoloGeneLY75
Homology/Alignments : Family Browser (UCSC)LY75
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerLY75 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LY75
dbVarLY75
ClinVarLY75
1000_GenomesLY75 
Exome Variant ServerLY75
ExAC (Exome Aggregation Consortium)LY75 (select the gene name)
SNP (GeneSNP Utah)LY75
SNP : HGBaseLY75
Genetic variants : HAPMAPLY75
Genomic Variants (DGV)LY75 [DGVbeta]
Mutations
ICGC Data PortalLY75 
TCGA Data PortalLY75 
Broad Tumor PortalLY75
OASIS PortalLY75 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLY75 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LY75
DgiDB (Drug Gene Interaction Database)LY75
DoCM (Curated mutations)LY75 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LY75 (select a term)
intoGenLY75
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:160659868-160761267
CONAN: Copy Number AnalysisLY75 
Mutations and Diseases : HGMDLY75
OMIM604524   
MedgenLY75
Genetic Testing Registry LY75
NextProtO60449 [Medical]
TSGene4065
GENETestsLY75
Huge Navigator LY75 [HugePedia]  LY75 [HugeCancerGEM]
snp3D : Map Gene to Disease4065
BioCentury BCIQLY75
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4065
Chemical/Pharm GKB GenePA30493
Clinical trialLY75
Miscellaneous
canSAR (ICR)LY75 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLY75
GoPubMedLY75
iHOPLY75
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Apr 16 17:52:03 CEST 2016

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