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LY75 (lymphocyte antigen 75)

Identity

Other namesCD205
CLEC13B
DEC-205
GP200-MR6
LY-75
HGNC (Hugo) LY75
LocusID (NCBI) 4065
Location 2q24.2
Location_base_pair Starts at 160659868 and ends at 160761267 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LY75   6729
Cards
Entrez_Gene (NCBI)LY75  4065  lymphocyte antigen 75
GeneCards (Weizmann)LY75
Ensembl (Hinxton)ENSG00000054219 [Gene_View]  chr2:160659868-160761267 [Contig_View]  LY75 [Vega]
ICGC DataPortalENSG00000054219
cBioPortalLY75
AceView (NCBI)LY75
Genatlas (Paris)LY75
WikiGenes4065
SOURCE (Princeton)NM_002349
Genomic and cartography
GoldenPath (UCSC)LY75  -  2q24.2   chr2:160659868-160761267 -  2q24.2   [Description]    (hg19-Feb_2009)
EnsemblLY75 - 2q24.2 [CytoView]
Mapping of homologs : NCBILY75 [Mapview]
OMIM604524   
Gene and transcription
Genbank (Entrez)AA279177 AB208915 AF011333 AF064827 AK310678
RefSeq transcript (Entrez)NM_002349
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838860 NW_004929305
Consensus coding sequences : CCDS (NCBI)LY75
Cluster EST : UnigeneHs.153563 [ NCBI ]
CGAP (NCI)Hs.153563
Alternative Splicing : Fast-db (Paris)GSHG0018091
Alternative Splicing GalleryENSG00000054219
Gene ExpressionLY75 [ NCBI-GEO ]     LY75 [ SEEK ]   LY75 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60449 (Uniprot)
NextProtO60449  [Medical]
With graphics : InterProO60449
Splice isoforms : SwissVarO60449 (Swissvar)
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)    FN2_1 (PS00023)    FN2_2 (PS51092)    RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)C-type_lectin [organisation]   C-type_lectin-like [organisation]   C-type_lectin_CS [organisation]   C-type_lectin_fold [organisation]   FN_type2_col-bd [organisation]   Kringle-like [organisation]   Ricin_B_lectin [organisation]  
Related proteins : CluSTrO60449
Domain families : Pfam (Sanger)fn2 (PF00040)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00040    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  FN2 (SM00059)  RICIN (SM00458)  
DMDM Disease mutations4065
Blocks (Seattle)O60449
Human Protein AtlasENSG00000054219 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO60449
HPRD05161
IPIIPI00027381   IPI00789911   IPI00789398   
Protein Interaction databases
DIP (DOE-UCLA)O60449
IntAct (EBI)O60449
FunCoupENSG00000054219
BioGRIDLY75
InParanoidO60449
Interologous Interaction database O60449
IntegromeDBLY75
STRING (EMBL)LY75
Ontologies - Pathways
Ontology : AmiGOreceptor activity  integral component of plasma membrane  endocytosis  inflammatory response  immune response  carbohydrate binding  extracellular vesicular exosome  
Ontology : EGO-EBIreceptor activity  integral component of plasma membrane  endocytosis  inflammatory response  immune response  carbohydrate binding  extracellular vesicular exosome  
Protein Interaction DatabaseLY75
Wikipedia pathwaysLY75
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LY75
snp3D : Map Gene to Disease4065
SNP (GeneSNP Utah)LY75
SNP : HGBaseLY75
Genetic variants : HAPMAPLY75
Exome VariantLY75
1000_GenomesLY75 
ICGC programENSG00000054219 
Somatic Mutations in Cancer : COSMICLY75 
CONAN: Copy Number AnalysisLY75 
Mutations and Diseases : HGMDLY75
Mutations and Diseases : intOGenLY75
Genomic VariantsLY75  LY75 [DGVbeta]
dbVarLY75
ClinVarLY75
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604524   
MedgenLY75
GENETestsLY75
Disease Genetic AssociationLY75
Huge Navigator LY75 [HugePedia]  LY75 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneLY75
Homology/Alignments : Family Browser (UCSC)LY75
Phylogenetic Trees/Animal Genes : TreeFamLY75
Chemical/Protein Interactions : CTD4065
Chemical/Pharm GKB GenePA30493
Clinical trialLY75
Cancer Resource (Charite)ENSG00000054219
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineLY75
iHOPLY75
OncoSearchLY75
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:01:00 CEST 2014

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