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MAGEB1 (MAGE family member B1)

Identity

Alias_namesmelanoma antigen family B1
Alias_symbol (synonym)MAGEL1
MAGE-Xp
DAM10
MGC9322
CT3.1
Other alias
HGNC (Hugo) MAGEB1
LocusID (NCBI) 4112
Atlas_Id 41253
Location Xp21.2  [Link to chromosome band Xp21]
Location_base_pair Starts at 30243731 and ends at 30252038 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB1   6808
Cards
Entrez_Gene (NCBI)MAGEB1  4112  MAGE family member B1
AliasesCT3.1; DAM10; MAGE-Xp; MAGEL1
GeneCards (Weizmann)MAGEB1
Ensembl hg19 (Hinxton)ENSG00000214107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214107 [Gene_View]  ENSG00000214107 [Sequence]  chrX:30243731-30252038 [Contig_View]  MAGEB1 [Vega]
ICGC DataPortalENSG00000214107
TCGA cBioPortalMAGEB1
AceView (NCBI)MAGEB1
Genatlas (Paris)MAGEB1
WikiGenes4112
SOURCE (Princeton)MAGEB1
Genetics Home Reference (NIH)MAGEB1
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEB1  -     chrX:30243731-30252038 +  Xp21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEB1  -     Xp21.2   [Description]    (hg19-Feb_2009)
GoldenPathMAGEB1 - Xp21.2 [CytoView hg19]  MAGEB1 - Xp21.2 [CytoView hg38]
Genome Data Viewer NCBIMAGEB1 [Mapview hg19]  
OMIM300097   
Gene and transcription
Genbank (Entrez)AK314977 BC013772 BU166425 CR541762 DB022312
RefSeq transcript (Entrez)NM_002363 NM_177404 NM_177415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEB1
Alternative Splicing GalleryENSG00000214107
Gene ExpressionMAGEB1 [ NCBI-GEO ]   MAGEB1 [ EBI - ARRAY_EXPRESS ]   MAGEB1 [ SEEK ]   MAGEB1 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB1 [ Firebrowse - Broad ]
GenevisibleExpression of MAGEB1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4112
GTEX Portal (Tissue expression)MAGEB1
Human Protein AtlasENSG00000214107-MAGEB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43366   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43366  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43366
Splice isoforms : SwissVarP43366
PhosPhoSitePlusP43366
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE    MAGE_N    MAGE_WH1    MAGE_WH2    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEB1
DMDM Disease mutations4112
PDB (RSDB)6R7T   
PDB Europe6R7T   
PDB (PDBSum)6R7T   
PDB (IMB)6R7T   
Structural Biology KnowledgeBase6R7T   
SCOP (Structural Classification of Proteins)6R7T   
CATH (Classification of proteins structures)6R7T   
SuperfamilyP43366
Human Protein Atlas [tissue]ENSG00000214107-MAGEB1 [tissue]
Peptide AtlasP43366
HPRD02108
IPIIPI00018080   
Protein Interaction databases
DIP (DOE-UCLA)P43366
IntAct (EBI)P43366
FunCoupENSG00000214107
BioGRIDMAGEB1
STRING (EMBL)MAGEB1
ZODIACMAGEB1
Ontologies - Pathways
QuickGOP43366
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMAGEB1
Atlas of Cancer Signalling NetworkMAGEB1
Wikipedia pathwaysMAGEB1
Orthology - Evolution
OrthoDB4112
GeneTree (enSembl)ENSG00000214107
Phylogenetic Trees/Animal Genes : TreeFamMAGEB1
HOGENOMP43366
Homologs : HomoloGeneMAGEB1
Homology/Alignments : Family Browser (UCSC)MAGEB1
Gene fusions - Rearrangements
Fusion : QuiverMAGEB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB1
dbVarMAGEB1
ClinVarMAGEB1
1000_GenomesMAGEB1 
Exome Variant ServerMAGEB1
GNOMAD BrowserENSG00000214107
Varsome BrowserMAGEB1
Genetic variants : HAPMAP4112
Genomic Variants (DGV)MAGEB1 [DGVbeta]
DECIPHERMAGEB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEB1 
Mutations
ICGC Data PortalMAGEB1 
TCGA Data PortalMAGEB1 
Broad Tumor PortalMAGEB1
OASIS PortalMAGEB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMAGEB1
Mutations and Diseases : HGMDMAGEB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutaselect MAGEB1
DgiDB (Drug Gene Interaction Database)MAGEB1
DoCM (Curated mutations)MAGEB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB1 (select a term)
intoGenMAGEB1
Cancer3DMAGEB1 (select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300097   
Orphanet
DisGeNETMAGEB1
MedgenMAGEB1
Genetic Testing Registry MAGEB1
NextProtP43366 [Medical]
TSGene4112
GENETestsMAGEB1
Open Targets GeneticsENSG00000214107  [validation]
snp3D : Map Gene to Disease4112
BioCentury BCIQMAGEB1
ClinGenMAGEB1
Clinical trials, drugs, therapy
Protein Interactions : CTD4112
Pharm GKB GenePA30554
Clinical trialMAGEB1
Miscellaneous
canSAR (ICR)MAGEB1 (select the gene name)
HarmonizomeMAGEB1
DataMed IndexMAGEB1
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB1
EVEXMAGEB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jul 11 19:56:59 CEST 2020

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