Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MALINC1 (mitosis associated long intergenic non-coding RNA 1)

Identity

Alias_namesLINC01024
long intergenic non-protein coding RNA 1024
Alias_symbol (synonym)MA-linc1
Other alias
HGNC (Hugo) MALINC1
LocusID (NCBI) 100505636
Atlas_Id 56956
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140102922 and ends at 140108012 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)MALINC1   49009
Cards
Entrez_Gene (NCBI)MALINC1  100505636  mitosis associated long intergenic non-coding RNA 1
AliasesLINC01024; MA-linc1
GeneCards (Weizmann)MALINC1
Ensembl hg19 (Hinxton)ENSG00000245146 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245146 [Gene_View]  ENSG00000245146 [Sequence]  chr5:140102922-140108012 [Contig_View]  MALINC1 [Vega]
ICGC DataPortalENSG00000245146
TCGA cBioPortalMALINC1
AceView (NCBI)MALINC1
Genatlas (Paris)MALINC1
WikiGenes100505636
SOURCE (Princeton)MALINC1
Genetics Home Reference (NIH)MALINC1
Genomic and cartography
GoldenPath hg38 (UCSC)MALINC1  -     chr5:140102922-140108012 -  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MALINC1  -     5q31.3   [Description]    (hg19-Feb_2009)
GoldenPathMALINC1 - 5q31.3 [CytoView hg19]  MALINC1 - 5q31.3 [CytoView hg38]
ImmunoBaseENSG00000245146
Mapping of homologs : NCBIMALINC1 [Mapview hg19]  MALINC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL557445 BC042448 BG772617 DA277756 DB451602
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MALINC1
Alternative Splicing GalleryENSG00000245146
Gene ExpressionMALINC1 [ NCBI-GEO ]   MALINC1 [ EBI - ARRAY_EXPRESS ]   MALINC1 [ SEEK ]   MALINC1 [ MEM ]
Gene Expression Viewer (FireBrowse)MALINC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505636
GTEX Portal (Tissue expression)MALINC1
Human Protein AtlasENSG00000245146-MALINC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MALINC1
DMDM Disease mutations100505636
Blocks (Seattle)MALINC1
Human Protein Atlas [tissue]ENSG00000245146-MALINC1 [tissue]
Protein Interaction databases
FunCoupENSG00000245146
BioGRIDMALINC1
STRING (EMBL)MALINC1
ZODIACMALINC1
Ontologies - Pathways
Huge Navigator MALINC1 [HugePedia]
snp3D : Map Gene to Disease100505636
BioCentury BCIQMALINC1
ClinGenMALINC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505636
Clinical trialMALINC1
Miscellaneous
canSAR (ICR)MALINC1 (select the gene name)
HarmonizomeMALINC1
DataMed IndexMALINC1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMALINC1
EVEXMALINC1
GoPubMedMALINC1
iHOPMALINC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Mar 11 19:16:04 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.