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MARCHF6 (-)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 10299
Atlas_Id 54088
Location -  [Link to chromosome band ]
Location_base_pair Starts at 10353639 and ends at 10440388 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t0505p15p15ID6899


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)MARCHF6  10299  -
Aliases
GeneCards (Weizmann)MARCHF6
Ensembl hg19 (Hinxton)ENSG00000145495 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145495 [Gene_View]  ENSG00000145495 [Sequence]  chr5:10353639-10440388 [Contig_View]  MARCHF6 [Vega]
ICGC DataPortalENSG00000145495
TCGA cBioPortalMARCHF6
AceView (NCBI)MARCHF6
Genatlas (Paris)MARCHF6
WikiGenes10299
SOURCE (Princeton)MARCHF6
Genetics Home Reference (NIH)MARCHF6
Genomic and cartography
GoldenPath hg38 (UCSC)MARCHF6  -     chr5:10353639-10440388 +  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MARCHF6  -     -   [Description]    (hg19-Feb_2009)
GoldenPathMARCHF6 - - [CytoView hg19]  MARCHF6 - - [CytoView hg38]
ImmunoBaseENSG00000145495
Mapping of homologs : NCBIMARCHF6 [Mapview hg19]  MARCHF6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MARCHF6
Alternative Splicing GalleryENSG00000145495
Gene ExpressionMARCHF6 [ NCBI-GEO ]   MARCHF6 [ EBI - ARRAY_EXPRESS ]   MARCHF6 [ SEEK ]   MARCHF6 [ MEM ]
Gene Expression Viewer (FireBrowse)MARCHF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10299
GTEX Portal (Tissue expression)MARCHF6
Human Protein AtlasENSG00000145495-MARCHF6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60337   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60337  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60337
Splice isoforms : SwissVarO60337
PhosPhoSitePlusO60337
Domaine pattern : Prosite (Expaxy)ZF_RING_CH (PS51292)   
Domains : Interpro (EBI)Znf_RING-CH    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)RINGv (PF12906)   
Domain families : Pfam (NCBI)pfam12906   
Domain families : Smart (EMBL)RINGv (SM00744)  
Conserved Domain (NCBI)MARCHF6
DMDM Disease mutations10299
Blocks (Seattle)MARCHF6
SuperfamilyO60337
Human Protein Atlas [tissue]ENSG00000145495-MARCHF6 [tissue]
Peptide AtlasO60337
HPRD11095
Protein Interaction databases
DIP (DOE-UCLA)O60337
IntAct (EBI)O60337
FunCoupENSG00000145495
BioGRIDMARCHF6
STRING (EMBL)MARCHF6
ZODIACMARCHF6
Ontologies - Pathways
QuickGOO60337
Ontology : AmiGO
Ontology : EGO-EBI
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkMARCHF6
Atlas of Cancer Signalling NetworkMARCHF6
Wikipedia pathwaysMARCHF6
Orthology - Evolution
OrthoDB10299
GeneTree (enSembl)ENSG00000145495
Phylogenetic Trees/Animal Genes : TreeFam-
HOGENOMO60337
Homologs : HomoloGeneMARCHF6
Homology/Alignments : Family Browser (UCSC)MARCHF6
Gene fusions - Rearrangements
Fusion : MitelmanMARCH6/IRX4 [5p15.2/5p15.33]  
Fusion : QuiverMARCHF6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMARCHF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MARCHF6
dbVarMARCHF6
ClinVarMARCHF6
1000_GenomesMARCHF6 
Exome Variant ServerMARCHF6
ExAC (Exome Aggregation Consortium)ENSG00000145495
GNOMAD BrowserENSG00000145495
Varsome BrowserMARCHF6
Genetic variants : HAPMAP10299
Genomic Variants (DGV)MARCHF6 [DGVbeta]
DECIPHERMARCHF6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMARCHF6 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMARCHF6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMARCHF6
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MARCHF6
DgiDB (Drug Gene Interaction Database)MARCHF6
DoCM (Curated mutations)MARCHF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MARCHF6 (select a term)
intoGenMARCHF6
Cancer3DMARCHF6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMARCHF6
MedgenMARCHF6
Genetic Testing Registry MARCHF6
NextProtO60337 [Medical]
TSGene10299
GENETestsMARCHF6
Target ValidationMARCHF6
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease10299
BioCentury BCIQMARCHF6
ClinGenMARCHF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10299
Clinical trialMARCHF6
Miscellaneous
canSAR (ICR)MARCHF6 (select the gene name)
HarmonizomeMARCHF6
DataMed IndexMARCHF6
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineMARCHF6
EVEXMARCHF6
GoPubMedMARCHF6
iHOPMARCHF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Mar 11 19:16:22 CET 2020

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