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MFRP (membrane frizzled-related protein)

Identity

Alias (NCBI)CTRP5
MCOP5
NNO2
RD6
HGNC (Hugo) MFRP
HGNC Alias symbFLJ30570
rd6
NNO2
C1QTNF5
HGNC Alias namemembrane-type frizzled-related protein
 complement C1q tumor necrosis factor-related protein 5 precursor variant 1
LocusID (NCBI) 83552
Atlas_Id 68935
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119338934 and ends at 119346673 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MFRP   18121
Cards
Entrez_Gene (NCBI)MFRP  83552  membrane frizzled-related protein
AliasesCTRP5; MCOP5; NNO2; RD6
GeneCards (Weizmann)MFRP
Ensembl hg19 (Hinxton)ENSG00000235718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235718 [Gene_View]  ENSG00000235718 [Sequence]  chr11:119338934-119346673 [Contig_View]  MFRP [Vega]
ICGC DataPortalENSG00000235718
TCGA cBioPortalMFRP
AceView (NCBI)MFRP
Genatlas (Paris)MFRP
WikiGenes83552
SOURCE (Princeton)MFRP
Genetics Home Reference (NIH)MFRP
Genomic and cartography
GoldenPath hg38 (UCSC)MFRP  -     chr11:119338934-119346673 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFRP  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathMFRP - 11q23.3 [CytoView hg19]  MFRP - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000235718
genome Data Viewer NCBIMFRP [Mapview hg19]  
OMIM606227   609549   611040   
Gene and transcription
Genbank (Entrez)AB055505 AJ862823 AK055132 AK295203 AL110261
RefSeq transcript (Entrez)NM_031433
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFRP
Alternative Splicing GalleryENSG00000235718
Gene ExpressionMFRP [ NCBI-GEO ]   MFRP [ EBI - ARRAY_EXPRESS ]   MFRP [ SEEK ]   MFRP [ MEM ]
Gene Expression Viewer (FireBrowse)MFRP [ Firebrowse - Broad ]
GenevisibleExpression of MFRP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83552
GTEX Portal (Tissue expression)MFRP
Human Protein AtlasENSG00000235718-MFRP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY79
Splice isoforms : SwissVarQ9BY79
PhosPhoSitePlusQ9BY79
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    FZ (PS50038)    LDLRA_1 (PS01209)    LDLRA_2 (PS50068)   
Domains : Interpro (EBI)CUB_dom    Frizzled_dom    Frizzled_dom_sf    LDL_receptor-like_sf    LDLR_class-A_CS    LDrepeatLR_classA_rpt    Sperma_CUB_dom_sf   
Domain families : Pfam (Sanger)CUB (PF00431)    Fz (PF01392)    Ldl_recept_a (PF00057)   
Domain families : Pfam (NCBI)pfam00431    pfam01392    pfam00057   
Domain families : Smart (EMBL)CUB (SM00042)  FRI (SM00063)  LDLa (SM00192)  
Conserved Domain (NCBI)MFRP
DMDM Disease mutations83552
Blocks (Seattle)MFRP
SuperfamilyQ9BY79
Human Protein Atlas [tissue]ENSG00000235718-MFRP [tissue]
Peptide AtlasQ9BY79
HPRD06941
IPIIPI00304533   IPI00909278   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY79
IntAct (EBI)Q9BY79
FunCoupENSG00000235718
BioGRIDMFRP
STRING (EMBL)MFRP
ZODIACMFRP
Ontologies - Pathways
QuickGOQ9BY79
Ontology : AmiGOmolecular_function  visual perception  embryo development ending in birth or egg hatching  integral component of membrane  apical plasma membrane  eye photoreceptor cell development  retina development in camera-type eye  
Ontology : EGO-EBImolecular_function  visual perception  embryo development ending in birth or egg hatching  integral component of membrane  apical plasma membrane  eye photoreceptor cell development  retina development in camera-type eye  
NDEx NetworkMFRP
Atlas of Cancer Signalling NetworkMFRP
Wikipedia pathwaysMFRP
Orthology - Evolution
OrthoDB83552
GeneTree (enSembl)ENSG00000235718
Phylogenetic Trees/Animal Genes : TreeFamMFRP
HOGENOMQ9BY79
Homologs : HomoloGeneMFRP
Homology/Alignments : Family Browser (UCSC)MFRP
Gene fusions - Rearrangements
Fusion : QuiverMFRP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFRP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFRP
dbVarMFRP
ClinVarMFRP
1000_GenomesMFRP 
Exome Variant ServerMFRP
GNOMAD BrowserENSG00000235718
Varsome BrowserMFRP
Genetic variants : HAPMAP83552
Genomic Variants (DGV)MFRP [DGVbeta]
DECIPHERMFRP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFRP 
Mutations
ICGC Data PortalMFRP 
TCGA Data PortalMFRP 
Broad Tumor PortalMFRP
OASIS PortalMFRP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFRP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMFRP
Mutations and Diseases : HGMDMFRP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch MFRP
DgiDB (Drug Gene Interaction Database)MFRP
DoCM (Curated mutations)MFRP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFRP (select a term)
intoGenMFRP
Cancer3DMFRP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606227    609549    611040   
Orphanet19619    10378   
DisGeNETMFRP
MedgenMFRP
Genetic Testing Registry MFRP
NextProtQ9BY79 [Medical]
TSGene83552
GENETestsMFRP
Target ValidationMFRP
Huge Navigator MFRP [HugePedia]
snp3D : Map Gene to Disease83552
BioCentury BCIQMFRP
ClinGenMFRP
Clinical trials, drugs, therapy
Protein Interactions : CTD83552
Pharm GKB GenePA30776
Clinical trialMFRP
Miscellaneous
canSAR (ICR)MFRP (select the gene name)
HarmonizomeMFRP
DataMed IndexMFRP
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFRP
EVEXMFRP
GoPubMedMFRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:13:39 CEST 2020
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