Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR3180-5 (microRNA 3180-5)

Identity

Alias_symbol (synonym)hsa-mir-3180-5
Other aliasmir-3180-5
HGNC (Hugo) MIR3180-5
LocusID (NCBI) 100500916
Atlas_Id 57417
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2135977 and ends at 2136129 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR3180-5   38969
Cards
Entrez_Gene (NCBI)MIR3180-5  100500916  microRNA 3180-5
Aliasesmir-3180-5
GeneCards (Weizmann)MIR3180-5
Ensembl hg19 (Hinxton)ENSG00000264397 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000264397 [Gene_View]  ENSG00000264397 [Sequence]  chr16:2135977-2136129 [Contig_View]  MIR3180-5 [Vega]
ICGC DataPortalENSG00000264397
TCGA cBioPortalMIR3180-5
AceView (NCBI)MIR3180-5
Genatlas (Paris)MIR3180-5
WikiGenes100500916
SOURCE (Princeton)MIR3180-5
Genetics Home Reference (NIH)MIR3180-5
miRBaseMIR3180-5
dbDEMCMIR3180-5
Genomic and cartography
GoldenPath hg38 (UCSC)MIR3180-5  -     chr16:2135977-2136129 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR3180-5  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathMIR3180-5 - 16p13.3 [CytoView hg19]  MIR3180-5 - 16p13.3 [CytoView hg38]
Genome Data Viewer NCBIMIR3180-5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)LM611243
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR3180-5
Alternative Splicing GalleryENSG00000264397
Gene ExpressionMIR3180-5 [ NCBI-GEO ]   MIR3180-5 [ EBI - ARRAY_EXPRESS ]   MIR3180-5 [ SEEK ]   MIR3180-5 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR3180-5 [ Firebrowse - Broad ]
GenevisibleExpression of MIR3180-5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100500916
GTEX Portal (Tissue expression)MIR3180-5
Human Protein AtlasENSG00000264397-MIR3180-5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR3180-5
DMDM Disease mutations100500916
Human Protein Atlas [tissue]ENSG00000264397-MIR3180-5 [tissue]
Protein Interaction databases
FunCoupENSG00000264397
BioGRIDMIR3180-5
STRING (EMBL)MIR3180-5
ZODIACMIR3180-5
Ontologies - Pathways
snp3D : Map Gene to Disease100500916
BioCentury BCIQMIR3180-5
ClinGenMIR3180-5
Clinical trials, drugs, therapy
Protein Interactions : CTD100500916
Clinical trialMIR3180-5
Miscellaneous
canSAR (ICR)MIR3180-5 (select the gene name)
HarmonizomeMIR3180-5
DataMed IndexMIR3180-5
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR3180-5
EVEXMIR3180-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jul 11 19:58:56 CEST 2020

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