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MSANTD3 (Myb/SANT DNA binding domain containing 3)

Identity

Alias_namesC9orf30
chromosome 9 open reading frame 30
Myb/SANT-like DNA-binding domain containing 3
Alias_symbol (synonym)MGC17337
Other aliasL8
HGNC (Hugo) MSANTD3
LocusID (NCBI) 91283
Atlas_Id 57096
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 100427213 and ends at 100451734 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
XRCC4 (5q14.2) / MSANTD3 (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MSANTD3   23370
Cards
Entrez_Gene (NCBI)MSANTD3  91283  Myb/SANT DNA binding domain containing 3
AliasesC9orf30; L8
GeneCards (Weizmann)MSANTD3
Ensembl hg19 (Hinxton)ENSG00000066697 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066697 [Gene_View]  ENSG00000066697 [Sequence]  chr9:100427213-100451734 [Contig_View]  MSANTD3 [Vega]
ICGC DataPortalENSG00000066697
TCGA cBioPortalMSANTD3
AceView (NCBI)MSANTD3
Genatlas (Paris)MSANTD3
WikiGenes91283
SOURCE (Princeton)MSANTD3
Genetics Home Reference (NIH)MSANTD3
Genomic and cartography
GoldenPath hg38 (UCSC)MSANTD3  -     chr9:100427213-100451734 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSANTD3  -     9q31.1   [Description]    (hg19-Feb_2009)
GoldenPathMSANTD3 - 9q31.1 [CytoView hg19]  MSANTD3 - 9q31.1 [CytoView hg38]
ImmunoBaseENSG00000066697
Mapping of homologs : NCBIMSANTD3 [Mapview hg19]  MSANTD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092292 AK314924 AY598327 BC008993 BI596498
RefSeq transcript (Entrez)NM_001198805 NM_001198806 NM_001198807 NM_080655
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSANTD3
Cluster EST : UnigeneHs.732964 [ NCBI ]
CGAP (NCI)Hs.732964
Alternative Splicing GalleryENSG00000066697
Gene ExpressionMSANTD3 [ NCBI-GEO ]   MSANTD3 [ EBI - ARRAY_EXPRESS ]   MSANTD3 [ SEEK ]   MSANTD3 [ MEM ]
Gene Expression Viewer (FireBrowse)MSANTD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91283
GTEX Portal (Tissue expression)MSANTD3
Human Protein AtlasENSG00000066697-MSANTD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H12
Splice isoforms : SwissVarQ96H12
PhosPhoSitePlusQ96H12
Domains : Interpro (EBI)Msantd3    Myb_DNA-bind_5   
Domain families : Pfam (Sanger)Myb_DNA-bind_5 (PF13873)   
Domain families : Pfam (NCBI)pfam13873   
Conserved Domain (NCBI)MSANTD3
DMDM Disease mutations91283
Blocks (Seattle)MSANTD3
SuperfamilyQ96H12
Human Protein Atlas [tissue]ENSG00000066697-MSANTD3 [tissue]
Peptide AtlasQ96H12
IPIIPI00062697   IPI00640679   IPI00643574   IPI00643903   
Protein Interaction databases
DIP (DOE-UCLA)Q96H12
IntAct (EBI)Q96H12
FunCoupENSG00000066697
BioGRIDMSANTD3
STRING (EMBL)MSANTD3
ZODIACMSANTD3
Ontologies - Pathways
QuickGOQ96H12
Ontology : AmiGOidentical protein binding  
Ontology : EGO-EBIidentical protein binding  
NDEx NetworkMSANTD3
Atlas of Cancer Signalling NetworkMSANTD3
Wikipedia pathwaysMSANTD3
Orthology - Evolution
OrthoDB91283
GeneTree (enSembl)ENSG00000066697
Phylogenetic Trees/Animal Genes : TreeFamMSANTD3
HOGENOMQ96H12
Homologs : HomoloGeneMSANTD3
Homology/Alignments : Family Browser (UCSC)MSANTD3
Gene fusions - Rearrangements
Fusion : QuiverMSANTD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSANTD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSANTD3
dbVarMSANTD3
ClinVarMSANTD3
1000_GenomesMSANTD3 
Exome Variant ServerMSANTD3
ExAC (Exome Aggregation Consortium)ENSG00000066697
GNOMAD BrowserENSG00000066697
Varsome BrowserMSANTD3
Genetic variants : HAPMAP91283
Genomic Variants (DGV)MSANTD3 [DGVbeta]
DECIPHERMSANTD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSANTD3 
Mutations
ICGC Data PortalMSANTD3 
TCGA Data PortalMSANTD3 
Broad Tumor PortalMSANTD3
OASIS PortalMSANTD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSANTD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMSANTD3
Mutations and Diseases : HGMDMSANTD3
BioMutasearch MSANTD3
DgiDB (Drug Gene Interaction Database)MSANTD3
DoCM (Curated mutations)MSANTD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSANTD3 (select a term)
intoGenMSANTD3
Cancer3DMSANTD3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMSANTD3
MedgenMSANTD3
Genetic Testing Registry MSANTD3
NextProtQ96H12 [Medical]
TSGene91283
GENETestsMSANTD3
Target ValidationMSANTD3
Huge Navigator MSANTD3 [HugePedia]
snp3D : Map Gene to Disease91283
BioCentury BCIQMSANTD3
ClinGenMSANTD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91283
Chemical/Pharm GKB GenePA142672311
Clinical trialMSANTD3
Miscellaneous
canSAR (ICR)MSANTD3 (select the gene name)
DataMed IndexMSANTD3
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSANTD3
EVEXMSANTD3
GoPubMedMSANTD3
iHOPMSANTD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:56:28 CET 2019
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