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MYOM1 (myomesin 1)

Identity

Other namesSKELEMIN
HGNC (Hugo) MYOM1
LocusID (NCBI) 8736
Location 18p11.31
Location_base_pair Starts at 3066805 and ends at 3220106 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MYOM1   7613
Entrez_Gene (NCBI)MYOM1  8736  myomesin 1
Cards
GeneCards (Weizmann)MYOM1
Ensembl (Hinxton)ENSG00000101605 [Gene_View]  chr18:3066805-3220106 [Contig_View]  MYOM1 [Vega]
AceView (NCBI)MYOM1
Genatlas (Paris)MYOM1
SOURCE (Stanford)NM_003803 NM_019856
Genomic and cartography
GoldenPath (UCSC)MYOM1  -  18p11.31   chr18:3066805-3220106 -  18p11.31   [Description]    (hg19-Feb_2009)
EnsemblMYOM1 - 18p11.31 [CytoView]
Mapping of homologs : NCBIMYOM1 [Mapview]
OMIM603508   
Gene and transcription
Genbank (Entrez)AF185573 AI221348 AJ621424 AK125322 AK302444
RefSeq transcript (SRS)NM_003803 NM_019856
RefSeq transcript (Entrez)NM_003803 NM_019856
RefSeq genomic (SRS)AC_000150 NC_000018 NC_018929 NG_032120 NT_010859 NW_001838461 NW_004078094
RefSeq genomic (Entrez)AC_000150 NC_000018 NC_018929 NG_032120 NT_010859 NW_001838461 NW_004078094
Consensus coding sequences : CCDS (NCBI)MYOM1
Cluster EST : UnigeneHs.464469 [ SRS ] Hs.464469 [ NCBI ]
CGAP (NCI)Hs.464469
Alternative Splicing : Fast-db (Paris)GSHG0014163
Alternative Splicing GalleryENSG00000101605
Gene ExpressionMYOM1 [ NCBI-GEO ]   MYOM1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52179 (SRS) P52179 (Uniprot)
NextProtP52179
With graphics : InterProP52179
Splice isoforms : SwissVarP52179(Swissvar)
Domaine pattern : Prosite (SRS)FN3 (PS50853)    IG_LIKE (PS50835)   
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (SRS)Fibronectin_type3    Ig-like    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domains : Interpro (EBI)Fibronectin_type3    Ig-like    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Related proteins : CluSTrP52179
Domain families : Pfam (SRS)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
DMDM8736
Blocks (Seattle)P52179
PDB (SRS)2R15    2Y23    2Y25    3RBS   
PDB (PDBSum)2R15    2Y23    2Y25    3RBS   
PDB (IMB)2R15    2Y23    2Y25    3RBS   
PDB (RSDB)2R15    2Y23    2Y25    3RBS   
Human Protein AtlasENSG00000101605
HPRD04618
IPIIPI00434580   IPI00479390   IPI00647020   
Protein Interaction databases
DIP (DOE-UCLA)P52179
IntAct (EBI)P52179
FunCoupENSG00000101605
REACTOMEMYOM1
Protein Interaction Database8736
BioGRIDMYOM1
InParanoidP52179
Interologous Interaction database P52179
IntegromeDBMYOM1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MYOM1
SNP (GeneSNP Utah)MYOM1
SNP : HGBaseMYOM1
Genetic variants : HAPMAPMYOM1
Somatic Mutations in Cancer : COSMICMYOM1 
CONAN: Copy Number AnalysisMYOM1 
Mutations and Diseases : HGMDMYOM1
OMIM603508   
GENETests603508   
Disease Genetic AssociationMYOM1
Huge Navigator MYOM1 [HugePedia]  MYOM1 [HugeCancerGEM]
Genomic VariantsMYOM1  MYOM1 [DGVbeta]
snp3D : Map Gene to Disease8736
General knowledge
Homologs : HomoloGeneMYOM1
Homology/Alignments : Family Browser (UCSC)MYOM1
Phylogenetic Trees/Animal Genes : TreeFamMYOM1
Chemical/Protein Interactions : CTD8736
Chemical/Pharm GKB GenePA31418
Clinical trialMYOM1
Cancer Resource (Charite)ENSG00000101605
Ontology : AmiGOstriated muscle myosin thick filament  muscle contraction  structural constituent of muscle  M band  
Ontology : EGO-EBIstriated muscle myosin thick filament  muscle contraction  structural constituent of muscle  M band  
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGeneMYOM1
iHOPMYOM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:38 CEST 2013
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