Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NBPF8 (NBPF member 8)

Identity

Alias_namesNBPF8P
neuroblastoma breakpoint family, member 8, pseudogene
Other alias
HGNC (Hugo) NBPF8
LocusID (NCBI) 728841
Atlas_Id 56450
Location 1p11.2  [Link to chromosome band 1p11]
Location_base_pair Starts at 120415027 and ends at 120469670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NBPF8   31990
Cards
Entrez_Gene (NCBI)NBPF8  728841  NBPF member 8
AliasesNBPF8P
GeneCards (Weizmann)NBPF8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr1:120415027-120469670 [Contig_View]  NBPF8 [Vega]
TCGA cBioPortalNBPF8
AceView (NCBI)NBPF8
Genatlas (Paris)NBPF8
WikiGenes728841
SOURCE (Princeton)NBPF8
Genetics Home Reference (NIH)NBPF8
Genomic and cartography
GoldenPath hg38 (UCSC)NBPF8  -     chr1:120415027-120469670 +  1p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NBPF8  -     1p11.2   [Description]    (hg19-Feb_2009)
GoldenPathNBPF8 - 1p11.2 [CytoView hg19]  NBPF8 - 1p11.2 [CytoView hg38]
Mapping of homologs : NCBINBPF8 [Mapview hg19]  NBPF8 [Mapview hg38]
OMIM613998   
Gene and transcription
Genbank (Entrez)AK300749 AK307809 AK308678 AY894561 AY894562
RefSeq transcript (Entrez)NM_001037501
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NBPF8
Gene ExpressionNBPF8 [ NCBI-GEO ]   NBPF8 [ EBI - ARRAY_EXPRESS ]   NBPF8 [ SEEK ]   NBPF8 [ MEM ]
Gene Expression Viewer (FireBrowse)NBPF8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728841
GTEX Portal (Tissue expression)NBPF8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3BBV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3BBV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3BBV2
Splice isoforms : SwissVarQ3BBV2
PhosPhoSitePlusQ3BBV2
Domaine pattern : Prosite (Expaxy)NBPF (PS51316)   
Domains : Interpro (EBI)Olduvai_dom   
Domain families : Pfam (Sanger)Olduvai (PF06758)   
Domain families : Pfam (NCBI)pfam06758   
Domain families : Smart (EMBL)DUF1220 (SM01148)  
Conserved Domain (NCBI)NBPF8
DMDM Disease mutations728841
Blocks (Seattle)NBPF8
SuperfamilyQ3BBV2
Peptide AtlasQ3BBV2
Protein Interaction databases
DIP (DOE-UCLA)Q3BBV2
IntAct (EBI)Q3BBV2
BioGRIDNBPF8
STRING (EMBL)NBPF8
ZODIACNBPF8
Ontologies - Pathways
QuickGOQ3BBV2
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkNBPF8
Atlas of Cancer Signalling NetworkNBPF8
Wikipedia pathwaysNBPF8
Orthology - Evolution
OrthoDB728841
Phylogenetic Trees/Animal Genes : TreeFamNBPF8
HOGENOMQ3BBV2
Homologs : HomoloGeneNBPF8
Homology/Alignments : Family Browser (UCSC)NBPF8
Gene fusions - Rearrangements
Fusion : QuiverNBPF8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNBPF8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NBPF8
dbVarNBPF8
ClinVarNBPF8
1000_GenomesNBPF8 
Exome Variant ServerNBPF8
Varsome BrowserNBPF8
Genetic variants : HAPMAP728841
Genomic Variants (DGV)NBPF8 [DGVbeta]
DECIPHERNBPF8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNBPF8 
Mutations
ICGC Data PortalNBPF8 
TCGA Data PortalNBPF8 
Broad Tumor PortalNBPF8
OASIS PortalNBPF8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNBPF8
BioMutasearch NBPF8
DgiDB (Drug Gene Interaction Database)NBPF8
DoCM (Curated mutations)NBPF8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NBPF8 (select a term)
intoGenNBPF8
Cancer3DNBPF8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613998   
Orphanet
DisGeNETNBPF8
MedgenNBPF8
Genetic Testing Registry NBPF8
NextProtQ3BBV2 [Medical]
TSGene728841
GENETestsNBPF8
Target ValidationNBPF8
Huge Navigator NBPF8 [HugePedia]
snp3D : Map Gene to Disease728841
BioCentury BCIQNBPF8
ClinGenNBPF8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728841
Chemical/Pharm GKB GenePA142671288
Clinical trialNBPF8
Miscellaneous
canSAR (ICR)NBPF8 (select the gene name)
DataMed IndexNBPF8
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNBPF8
EVEXNBPF8
GoPubMedNBPF8
iHOPNBPF8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 16:58:24 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.