| Nomenclature |
|---|
| HGNC (Hugo) | NCBP1 7658 |
| Cards |
|---|
| Entrez_Gene (NCBI) | NCBP1 4686 nuclear cap binding protein subunit 1 |
| Aliases | CBP80; NCBP; Sto1 |
| GeneCards (Weizmann) | NCBP1 |
| Ensembl hg19 (Hinxton) | ENSG00000136937 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000136937 [Gene_View] ENSG00000136937 [Sequence] chr9:97633423-97673747 [Contig_View] NCBP1 [Vega] |
| ICGC DataPortal | ENSG00000136937 |
| TCGA cBioPortal | NCBP1 |
| AceView (NCBI) | NCBP1 |
| Genatlas (Paris) | NCBP1 |
| WikiGenes | 4686 |
| SOURCE (Princeton) | NCBP1 |
| Genetics Home Reference (NIH) | NCBP1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | NCBP1 - chr9:97633423-97673747 + 9q22.33 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | NCBP1 - 9q22.33 [Description] (hg19-Feb_2009) |
| GoldenPath | NCBP1 - 9q22.33 [CytoView hg19] NCBP1 - 9q22.33 [CytoView hg38] |
| ImmunoBase | ENSG00000136937 |
| Mapping of homologs : NCBI | NCBP1 [Mapview hg19] NCBP1 [Mapview hg38] |
| OMIM | 600469 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB209233 AK312807 BC001450 CA418527 CN266899 |
| RefSeq transcript (Entrez) | NM_001351504 NM_001351505 NM_001351506 NM_001351507 NM_002486 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | NCBP1 |
| Cluster EST : Unigene | Hs.686479 [ NCBI ] |
| CGAP (NCI) | Hs.686479 |
| Alternative Splicing Gallery | ENSG00000136937 |
| Gene Expression | NCBP1 [ NCBI-GEO ] NCBP1 [ EBI - ARRAY_EXPRESS ]
NCBP1 [ SEEK ] NCBP1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | NCBP1 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 4686 |
| GTEX Portal (Tissue expression) | NCBP1 |
| Human Protein Atlas | ENSG00000136937-NCBP1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q09161 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q09161 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q09161 |
| Splice isoforms : SwissVar | Q09161 |
| PhosPhoSitePlus | Q09161 |
| Domains : Interpro (EBI) | ARM-type_fold CBP80 MIF4-like_sf MIF4G-like_typ-1 MIF4G-like_typ-2 MIF4G-like_typ-3 |
| Domain families : Pfam (Sanger) | MIF4G (PF02854) MIF4G_like (PF09088) MIF4G_like_2 (PF09090) |
| Domain families : Pfam (NCBI) | pfam02854 pfam09088 pfam09090 |
| Domain families : Smart (EMBL) | MIF4G (SM00543) |
| Conserved Domain (NCBI) | NCBP1 |
| DMDM Disease mutations | 4686 |
| Blocks (Seattle) | NCBP1 |
| PDB (RSDB) | 1H2T 1H2U 1H2V 1H6K 1N52 1N54 3FEX 3FEY 5OO6 5OOB |
| PDB Europe | 1H2T 1H2U 1H2V 1H6K 1N52 1N54 3FEX 3FEY 5OO6 5OOB |
| PDB (PDBSum) | 1H2T 1H2U 1H2V 1H6K 1N52 1N54 3FEX 3FEY 5OO6 5OOB |
| PDB (IMB) | 1H2T 1H2U 1H2V 1H6K 1N52 1N54 3FEX 3FEY 5OO6 5OOB |
| Structural Biology KnowledgeBase | 1H2T 1H2U 1H2V 1H6K 1N52 1N54 3FEX 3FEY 5OO6 5OOB |
| SCOP (Structural Classification of Proteins) | 1H2T 1H2U 1H2V 1H6K 1N52 1N54 3FEX 3FEY 5OO6 5OOB |
| CATH (Classification of proteins structures) | 1H2T 1H2U 1H2V 1H6K 1N52 1N54 3FEX 3FEY 5OO6 5OOB |
| Superfamily | Q09161 |
| Human Protein Atlas [tissue] | ENSG00000136937-NCBP1 [tissue] |
| Peptide Atlas | Q09161 |
| HPRD | 02717 |
| IPI | IPI00019380 IPI00982334 IPI00513689 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q09161 |
| IntAct (EBI) | Q09161 |
| FunCoup | ENSG00000136937 |
| BioGRID | NCBP1 |
| STRING (EMBL) | NCBP1 |
| ZODIAC | NCBP1 |
| Ontologies - Pathways |
|---|
| QuickGO | Q09161 |
| Ontology : AmiGO | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay spliceosomal complex assembly RNA cap binding RNA 7-methylguanosine cap binding mRNA splicing, via spliceosome RNA binding protein binding nucleus nucleus nucleoplasm nucleoplasm mitochondrion cytosol cytosol mRNA cap binding complex mRNA cap binding complex nuclear cap binding complex transcription by RNA polymerase II transcription elongation from RNA polymerase II promoter termination of RNA polymerase II transcription 7-methylguanosine mRNA capping 7-methylguanosine mRNA capping RNA export from nucleus mRNA export from nucleus mRNA export from nucleus mRNA export from nucleus regulation of translational initiation histone mRNA metabolic process RNA splicing fibroblast growth factor receptor signaling pathway RNA metabolic process positive regulation of cell growth gene silencing by RNA mRNA 3'-end processing positive regulation of mRNA 3'-end processing RNA cap binding complex RNA cap binding complex snRNA transcription by RNA polymerase II mRNA cis splicing, via spliceosome positive regulation of mRNA splicing, via spliceosome regulation of mRNA processing nuclear export pre-mRNA cleavage required for polyadenylation regulation of mRNA polyadenylation positive regulation of RNA binding ribonucleoprotein complex |
| Ontology : EGO-EBI | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay nuclear-transcribed mRNA catabolic process, nonsense-mediated decay spliceosomal complex assembly RNA cap binding RNA 7-methylguanosine cap binding mRNA splicing, via spliceosome RNA binding protein binding nucleus nucleus nucleoplasm nucleoplasm mitochondrion cytosol cytosol mRNA cap binding complex mRNA cap binding complex nuclear cap binding complex transcription by RNA polymerase II transcription elongation from RNA polymerase II promoter termination of RNA polymerase II transcription 7-methylguanosine mRNA capping 7-methylguanosine mRNA capping RNA export from nucleus mRNA export from nucleus mRNA export from nucleus mRNA export from nucleus regulation of translational initiation histone mRNA metabolic process RNA splicing fibroblast growth factor receptor signaling pathway RNA metabolic process positive regulation of cell growth gene silencing by RNA mRNA 3'-end processing positive regulation of mRNA 3'-end processing RNA cap binding complex RNA cap binding complex snRNA transcription by RNA polymerase II mRNA cis splicing, via spliceosome positive regulation of mRNA splicing, via spliceosome regulation of mRNA processing nuclear export pre-mRNA cleavage required for polyadenylation regulation of mRNA polyadenylation positive regulation of RNA binding ribonucleoprotein complex |
| NDEx Network | NCBP1 |
| Atlas of Cancer Signalling Network | NCBP1 |
| Wikipedia pathways | NCBP1 |
| Orthology - Evolution |
|---|
| OrthoDB | 4686 |
| GeneTree (enSembl) | ENSG00000136937 |
| Phylogenetic Trees/Animal Genes : TreeFam | NCBP1 |
| HOGENOM | Q09161 |
| Homologs : HomoloGene | NCBP1 |
| Homology/Alignments : Family Browser (UCSC) | NCBP1 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | NCBP1 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | NCBP1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | NCBP1 |
| dbVar | NCBP1 |
| ClinVar | NCBP1 |
| 1000_Genomes | NCBP1 |
| Exome Variant Server | NCBP1 |
| ExAC (Exome Aggregation Consortium) | ENSG00000136937 |
| GNOMAD Browser | ENSG00000136937 |
| Varsome Browser | NCBP1 |
| Genetic variants : HAPMAP | 4686 |
| Genomic Variants (DGV) | NCBP1 [DGVbeta] |
| DECIPHER | NCBP1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | NCBP1 |
| Mutations |
|---|
| ICGC Data Portal | NCBP1 |
| TCGA Data Portal | NCBP1 |
| Broad Tumor Portal | NCBP1 |
| OASIS Portal | NCBP1 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | NCBP1 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | NCBP1 |
| Mutations and Diseases : HGMD | NCBP1 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search NCBP1 |
| DgiDB (Drug Gene Interaction Database) | NCBP1 |
| DoCM (Curated mutations) | NCBP1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | NCBP1 (select a term) |
| intoGen | NCBP1 |
| Cancer3D | NCBP1(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 600469 |
| Orphanet | |
| DisGeNET | NCBP1 |
| Medgen | NCBP1 |
| Genetic Testing Registry | NCBP1
|
| NextProt | Q09161 [Medical] |
| TSGene | 4686 |
| GENETests | NCBP1 |
| Target Validation | NCBP1 |
| Huge Navigator |
NCBP1 [HugePedia] |
| snp3D : Map Gene to Disease | 4686 |
| BioCentury BCIQ | NCBP1 |
| ClinGen | NCBP1 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 4686 |
| Chemical/Pharm GKB Gene | PA31461 |
| Clinical trial | NCBP1 |
| Miscellaneous |
|---|
| canSAR (ICR) | NCBP1 (select the gene name) |
| DataMed Index | NCBP1 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 126 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | NCBP1 |
| EVEX | NCBP1 |
| GoPubMed | NCBP1 |
| iHOP | NCBP1 |
