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NCL (nucleolin)

Identity

Other namesC23
HGNC (Hugo) NCL
LocusID (NCBI) 4691
Location 2q37.1
Location_base_pair Starts at 232319459 and ends at 232329205 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NCL   7667
Cards
Entrez_Gene (NCBI)NCL  4691  nucleolin
GeneCards (Weizmann)NCL
Ensembl (Hinxton) [Gene_View]  chr2:232319459-232329205 [Contig_View]  NCL [Vega]
AceView (NCBI)NCL
Genatlas (Paris)NCL
WikiGenes4691
SOURCE (Princeton)NM_005381
Genomic and cartography
GoldenPath (UCSC)NCL  -  2q37.1   chr2:232319459-232329205 -  2q37.1   [Description]    (hg19-Feb_2009)
EnsemblNCL - 2q37.1 [CytoView]
Mapping of homologs : NCBINCL [Mapview]
OMIM164035   
Gene and transcription
Genbank (Entrez)AK000221 AK000250 AK001314 AK091742 AK095897
RefSeq transcript (Entrez)NM_005381
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838867 NW_004929305
Consensus coding sequences : CCDS (NCBI)NCL
Cluster EST : UnigeneHs.79110 [ NCBI ]
CGAP (NCI)Hs.79110
Alternative Splicing : Fast-db (Paris)GSHG0018409
Gene ExpressionNCL [ NCBI-GEO ]     NCL [ SEEK ]   NCL [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19338 (Uniprot)
NextProtP19338  [Medical]
With graphics : InterProP19338
Splice isoforms : SwissVarP19338 (Swissvar)
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Related proteins : CluSTrP19338
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM Disease mutations4691
Blocks (Seattle)P19338
PDB (SRS)2FC8    2FC9    2KRR   
PDB (PDBSum)2FC8    2FC9    2KRR   
PDB (IMB)2FC8    2FC9    2KRR   
PDB (RSDB)2FC8    2FC9    2KRR   
Peptide AtlasP19338
HPRD01245
IPIIPI00604620   IPI00444262   IPI00183526   IPI00917429   IPI00916991   IPI00916036   IPI00916188   
Protein Interaction databases
DIP (DOE-UCLA)P19338
IntAct (EBI)P19338
BioGRIDNCL
IntegromeDBNCL
STRING (EMBL)NCL
Ontologies - Pathways
QuickGOP19338
Ontology : AmiGOnucleotide binding  angiogenesis  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cell cortex  protein C-terminus binding  membrane  ribonucleoprotein complex  cytoplasmic ribonucleoprotein granule  telomeric DNA binding  identical protein binding  poly(A) RNA binding  extracellular vesicular exosome  positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter  
Ontology : EGO-EBInucleotide binding  angiogenesis  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cell cortex  protein C-terminus binding  membrane  ribonucleoprotein complex  cytoplasmic ribonucleoprotein granule  telomeric DNA binding  identical protein binding  poly(A) RNA binding  extracellular vesicular exosome  positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter  
Pathways : BIOCARTASARS Coronavirus Protease [Genes]   
Pathways : KEGGPathogenic Escherichia coli infection   
Protein Interaction DatabaseNCL
Wikipedia pathwaysNCL
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NCL
SNP (GeneSNP Utah)NCL
SNP : HGBaseNCL
Genetic variants : HAPMAPNCL
1000_GenomesNCL 
CONAN: Copy Number AnalysisNCL 
Somatic Mutations in Cancer : COSMICNCL 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)2:232319459-232329205
Mutations and Diseases : HGMDNCL
OMIM164035   
MedgenNCL
GENETestsNCL
Disease Genetic AssociationNCL
Huge Navigator NCL [HugePedia]  NCL [HugeCancerGEM]
Genomic VariantsNCL  NCL [DGVbeta]
Exome VariantNCL
dbVarNCL
ClinVarNCL
snp3D : Map Gene to Disease4691
General knowledge
Homologs : HomoloGeneNCL
Homology/Alignments : Family Browser (UCSC)NCL
Phylogenetic Trees/Animal Genes : TreeFamNCL
Chemical/Protein Interactions : CTD4691
Chemical/Pharm GKB GenePA31469
Clinical trialNCL
Other databases
Probes
Litterature
PubMed260 Pubmed reference(s) in Entrez
CoreMineNCL
GoPubMedNCL
iHOPNCL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:44:23 CET 2014

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