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NDC1 (NDC1 transmembrane nucleoporin)

Identity

Alias_namesTMEM48
transmembrane protein 48
Alias_symbol (synonym)FLJ10407
NET3
Other alias
HGNC (Hugo) NDC1
LocusID (NCBI) 55706
Atlas_Id 57939
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53765461 and ends at 53838552 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CXCL8 (4q13.3) / NDC1 (1p32.3)SAR1A (10q22.1) / NDC1 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;21)(p32;q22) RUNX1/NDC1


External links

Nomenclature
HGNC (Hugo)NDC1   25525
Cards
Entrez_Gene (NCBI)NDC1  55706  NDC1 transmembrane nucleoporin
AliasesNET3; TMEM48
GeneCards (Weizmann)NDC1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr1:53765461-53838552 [Contig_View]  NDC1 [Vega]
TCGA cBioPortalNDC1
AceView (NCBI)NDC1
Genatlas (Paris)NDC1
WikiGenes55706
SOURCE (Princeton)NDC1
Genetics Home Reference (NIH)NDC1
Genomic and cartography
GoldenPath hg38 (UCSC)NDC1  -     chr1:53765461-53838552 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDC1  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathNDC1 - 1p32.3 [CytoView hg19]  NDC1 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBINDC1 [Mapview hg19]  NDC1 [Mapview hg38]
OMIM610115   
Gene and transcription
Genbank (Entrez)AK001269 AK001593 AK022618 AK025450 AK091439
RefSeq transcript (Entrez)NM_001168551 NM_018087
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDC1
Cluster EST : UnigeneHs.476525 [ NCBI ]
CGAP (NCI)Hs.476525
Gene ExpressionNDC1 [ NCBI-GEO ]   NDC1 [ EBI - ARRAY_EXPRESS ]   NDC1 [ SEEK ]   NDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)NDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55706
GTEX Portal (Tissue expression)NDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTX1
Splice isoforms : SwissVarQ9BTX1
PhosPhoSitePlusQ9BTX1
Domains : Interpro (EBI)Nucleoporin_prot_Ndc1/Nup   
Domain families : Pfam (Sanger)Ndc1_Nup (PF09531)   
Domain families : Pfam (NCBI)pfam09531   
Conserved Domain (NCBI)NDC1
DMDM Disease mutations55706
Blocks (Seattle)NDC1
SuperfamilyQ9BTX1
Peptide AtlasQ9BTX1
IPIIPI00386760   IPI00746642   IPI00074330   IPI00003455   IPI00878119   IPI01011285   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTX1
IntAct (EBI)Q9BTX1
BioGRIDNDC1
STRING (EMBL)NDC1
ZODIACNDC1
Ontologies - Pathways
QuickGOQ9BTX1
Ontology : AmiGOnuclear envelope  nuclear pore  cytoplasm  plasma membrane  regulation of glycolytic process  mRNA export from nucleus  tRNA export from nucleus  nuclear pore organization  synapsis  spermatogenesis  protein transport  actin cytoskeleton  membrane  integral component of membrane  viral process  protein sumoylation  structural constituent of nuclear pore  structural constituent of nuclear pore  viral transcription  nuclear pore distribution  nuclear membrane  host cell  nuclear pore complex assembly  regulation of gene silencing by miRNA  nuclear pore transmembrane ring  intracellular transport of virus  regulation of cellular response to heat  
Ontology : EGO-EBInuclear envelope  nuclear pore  cytoplasm  plasma membrane  regulation of glycolytic process  mRNA export from nucleus  tRNA export from nucleus  nuclear pore organization  synapsis  spermatogenesis  protein transport  actin cytoskeleton  membrane  integral component of membrane  viral process  protein sumoylation  structural constituent of nuclear pore  structural constituent of nuclear pore  viral transcription  nuclear pore distribution  nuclear membrane  host cell  nuclear pore complex assembly  regulation of gene silencing by miRNA  nuclear pore transmembrane ring  intracellular transport of virus  regulation of cellular response to heat  
Pathways : KEGGRNA transport   
NDEx NetworkNDC1
Atlas of Cancer Signalling NetworkNDC1
Wikipedia pathwaysNDC1
Orthology - Evolution
OrthoDB55706
Phylogenetic Trees/Animal Genes : TreeFamNDC1
HOGENOMQ9BTX1
Homologs : HomoloGeneNDC1
Homology/Alignments : Family Browser (UCSC)NDC1
Gene fusions - Rearrangements
Fusion : QuiverNDC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDC1
dbVarNDC1
ClinVarNDC1
1000_GenomesNDC1 
Exome Variant ServerNDC1
Varsome BrowserNDC1
Genetic variants : HAPMAP55706
Genomic Variants (DGV)NDC1 [DGVbeta]
DECIPHERNDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDC1 
Mutations
ICGC Data PortalNDC1 
TCGA Data PortalNDC1 
Broad Tumor PortalNDC1
OASIS PortalNDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNDC1
Mutations and Diseases : HGMDNDC1
BioMutasearch NDC1
DgiDB (Drug Gene Interaction Database)NDC1
DoCM (Curated mutations)NDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDC1 (select a term)
intoGenNDC1
Cancer3DNDC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610115   
Orphanet
DisGeNETNDC1
MedgenNDC1
Genetic Testing Registry NDC1
NextProtQ9BTX1 [Medical]
TSGene55706
GENETestsNDC1
Target ValidationNDC1
Huge Navigator NDC1 [HugePedia]
snp3D : Map Gene to Disease55706
BioCentury BCIQNDC1
ClinGenNDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55706
Chemical/Pharm GKB GenePA142670764
Clinical trialNDC1
Miscellaneous
canSAR (ICR)NDC1 (select the gene name)
DataMed IndexNDC1
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDC1
EVEXNDC1
GoPubMedNDC1
iHOPNDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:57:32 CET 2019

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