Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NDUFV3 (NADH:ubiquinone oxidoreductase subunit V3)

Identity

Alias_namesNADH dehydrogenase (ubiquinone) flavoprotein 3 (10kD)
NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa
Alias_symbol (synonym)CI-10k
Other aliasCI-9KD
HGNC (Hugo) NDUFV3
LocusID (NCBI) 4731
Atlas_Id 70790
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 42893268 and ends at 42909663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NDUFV3 (21q22.3) / SHFM1 (7q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NDUFV3   7719
Cards
Entrez_Gene (NCBI)NDUFV3  4731  NADH:ubiquinone oxidoreductase subunit V3
AliasesCI-10k; CI-9KD
GeneCards (Weizmann)NDUFV3
Ensembl hg19 (Hinxton)ENSG00000160194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160194 [Gene_View]  ENSG00000160194 [Sequence]  chr21:42893268-42909663 [Contig_View]  NDUFV3 [Vega]
ICGC DataPortalENSG00000160194
TCGA cBioPortalNDUFV3
AceView (NCBI)NDUFV3
Genatlas (Paris)NDUFV3
WikiGenes4731
SOURCE (Princeton)NDUFV3
Genetics Home Reference (NIH)NDUFV3
Genomic and cartography
GoldenPath hg38 (UCSC)NDUFV3  -     chr21:42893268-42909663 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NDUFV3  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathNDUFV3 - 21q22.3 [CytoView hg19]  NDUFV3 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160194
Mapping of homologs : NCBINDUFV3 [Mapview hg19]  NDUFV3 [Mapview hg38]
OMIM602184   
Gene and transcription
Genbank (Entrez)AK056041 AK289586 AK308228 AY173949 BC021217
RefSeq transcript (Entrez)NM_001001503 NM_021075
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NDUFV3
Cluster EST : UnigeneHs.473937 [ NCBI ]
CGAP (NCI)Hs.473937
Alternative Splicing GalleryENSG00000160194
Gene ExpressionNDUFV3 [ NCBI-GEO ]   NDUFV3 [ EBI - ARRAY_EXPRESS ]   NDUFV3 [ SEEK ]   NDUFV3 [ MEM ]
Gene Expression Viewer (FireBrowse)NDUFV3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4731
GTEX Portal (Tissue expression)NDUFV3
Human Protein AtlasENSG00000160194-NDUFV3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56181   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56181  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56181
Splice isoforms : SwissVarP56181
Catalytic activity : Enzyme1.6.5.3 [ Enzyme-Expasy ]   1.6.5.31.6.5.3 [ IntEnz-EBI ]   1.6.5.3 [ BRENDA ]   1.6.5.3 [ KEGG ]   
PhosPhoSitePlusP56181
Domains : Interpro (EBI)NDUFV3   
Domain families : Pfam (Sanger)NDUFV3 (PF15880)   
Domain families : Pfam (NCBI)pfam15880   
Conserved Domain (NCBI)NDUFV3
DMDM Disease mutations4731
Blocks (Seattle)NDUFV3
PDB (RSDB)5XTB    5XTD    5XTH    5XTI   
PDB Europe5XTB    5XTD    5XTH    5XTI   
PDB (PDBSum)5XTB    5XTD    5XTH    5XTI   
PDB (IMB)5XTB    5XTD    5XTH    5XTI   
Structural Biology KnowledgeBase5XTB    5XTD    5XTH    5XTI   
SCOP (Structural Classification of Proteins)5XTB    5XTD    5XTH    5XTI   
CATH (Classification of proteins structures)5XTB    5XTD    5XTH    5XTI   
SuperfamilyP56181
Human Protein Atlas [tissue]ENSG00000160194-NDUFV3 [tissue]
Peptide AtlasP56181
HPRD03716
IPIIPI00008214   IPI00291016   IPI00657937   IPI00916085   IPI00915932   
Protein Interaction databases
DIP (DOE-UCLA)P56181
IntAct (EBI)P56181
FunCoupENSG00000160194
BioGRIDNDUFV3
STRING (EMBL)NDUFV3
ZODIACNDUFV3
Ontologies - Pathways
QuickGOP56181
Ontology : AmiGORNA binding  protein binding  nucleoplasm  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  mitochondrial electron transport, NADH to ubiquinone  mitochondrial electron transport, NADH to ubiquinone  NADH dehydrogenase (ubiquinone) activity  mitochondrial respiratory chain complex I assembly  mitochondrial ATP synthesis coupled electron transport  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  mitochondrion  mitochondrion  mitochondrial inner membrane  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  mitochondrial electron transport, NADH to ubiquinone  mitochondrial electron transport, NADH to ubiquinone  NADH dehydrogenase (ubiquinone) activity  mitochondrial respiratory chain complex I assembly  mitochondrial ATP synthesis coupled electron transport  
Pathways : KEGGOxidative phosphorylation   
NDEx NetworkNDUFV3
Atlas of Cancer Signalling NetworkNDUFV3
Wikipedia pathwaysNDUFV3
Orthology - Evolution
OrthoDB4731
GeneTree (enSembl)ENSG00000160194
Phylogenetic Trees/Animal Genes : TreeFamNDUFV3
HOGENOMP56181
Homologs : HomoloGeneNDUFV3
Homology/Alignments : Family Browser (UCSC)NDUFV3
Gene fusions - Rearrangements
Fusion : QuiverNDUFV3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNDUFV3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NDUFV3
dbVarNDUFV3
ClinVarNDUFV3
1000_GenomesNDUFV3 
Exome Variant ServerNDUFV3
ExAC (Exome Aggregation Consortium)ENSG00000160194
GNOMAD BrowserENSG00000160194
Varsome BrowserNDUFV3
Genetic variants : HAPMAP4731
Genomic Variants (DGV)NDUFV3 [DGVbeta]
DECIPHERNDUFV3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNDUFV3 
Mutations
ICGC Data PortalNDUFV3 
TCGA Data PortalNDUFV3 
Broad Tumor PortalNDUFV3
OASIS PortalNDUFV3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNDUFV3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNDUFV3
Mutations and Diseases : HGMDNDUFV3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NDUFV3
DgiDB (Drug Gene Interaction Database)NDUFV3
DoCM (Curated mutations)NDUFV3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NDUFV3 (select a term)
intoGenNDUFV3
Cancer3DNDUFV3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602184   
Orphanet
DisGeNETNDUFV3
MedgenNDUFV3
Genetic Testing Registry NDUFV3
NextProtP56181 [Medical]
TSGene4731
GENETestsNDUFV3
Target ValidationNDUFV3
Huge Navigator NDUFV3 [HugePedia]
snp3D : Map Gene to Disease4731
BioCentury BCIQNDUFV3
ClinGenNDUFV3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4731
Chemical/Pharm GKB GenePA31529
Clinical trialNDUFV3
Miscellaneous
canSAR (ICR)NDUFV3 (select the gene name)
DataMed IndexNDUFV3
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNDUFV3
EVEXNDUFV3
GoPubMedNDUFV3
iHOPNDUFV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Sep 3 15:57:39 CEST 2019

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