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NELL2 (NEL-like 2 (chicken))

Identity

Other namesNRP2
HGNC (Hugo) NELL2
LocusID (NCBI) 4753
Location 12q12
Location_base_pair Starts at 44902058 and ends at 45270633 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NELL2   7751
Entrez_Gene (NCBI)NELL2  4753  NEL-like 2 (chicken)
Cards
GeneCards (Weizmann)NELL2
Ensembl (Hinxton)ENSG00000184613 [Gene_View]  chr12:44902058-45270633 [Contig_View]  NELL2 [Vega]
AceView (NCBI)NELL2
Genatlas (Paris)NELL2
SOURCE (Stanford)NM_001145107 NM_001145108 NM_001145109 NM_001145110 NM_006159
Genomic and cartography
GoldenPath (UCSC)NELL2  -  12q12   chr12:44902058-45270633 -  12q12   [Description]    (hg19-Feb_2009)
EnsemblNELL2 - 12q12 [CytoView]
Mapping of homologs : NCBINELL2 [Mapview]
OMIM602320   
Gene and transcription
Genbank (Entrez)AK056082 AK095637 AK295125 AK297521 AK299277
RefSeq transcript (SRS)NM_001145107 NM_001145108 NM_001145109 NM_001145110 NM_006159
RefSeq transcript (Entrez)NM_001145107 NM_001145108 NM_001145109 NM_001145110 NM_006159
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075
Consensus coding sequences : CCDS (NCBI)NELL2
Cluster EST : UnigeneHs.505326 [ SRS ] Hs.505326 [ NCBI ]
CGAP (NCI)Hs.505326
Alternative Splicing : Fast-db (Paris)GSHG0007392
Alternative Splicing GalleryENSG00000184613
Gene ExpressionNELL2 [ NCBI-GEO ]   NELL2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99435 (SRS) Q99435 (Uniprot)
NextProtQ99435
With graphics : InterProQ99435
Splice isoforms : SwissVarQ99435(Swissvar)
Domaine pattern : Prosite (SRS)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    LAM_G_DOMAIN (PS50025)    VWFC_1 (PS01208)    VWFC_2 (PS50184)   
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    LAM_G_DOMAIN (PS50025)    VWFC_1 (PS01208)    VWFC_2 (PS50184)   
Domains : Interpro (SRS)ConA-like_lec_gl_sf    ConA-like_subgrp    EG-like_dom    EGF-like_Ca-bd    EGF-like_CS    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Laminin_G    VWF_C   
Domains : Interpro (EBI)ConA-like_lec_gl_sf    ConA-like_subgrp    EG-like_dom    EGF-like_Ca-bd    EGF-like_CS    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Laminin_G    VWF_C   
Related proteins : CluSTrQ99435
Domain families : Pfam (SRS)EGF_CA (PF07645)    Laminin_G_2 (PF02210)    VWC (PF00093)   
Domain families : Pfam (Sanger)EGF_CA (PF07645)    Laminin_G_2 (PF02210)    VWC (PF00093)   
Domain families : Pfam (NCBI)pfam07645    pfam02210    pfam00093   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  LamG (SM00282)  TSPN (SM00210)  VWC (SM00214)  
DMDM4753
Blocks (Seattle)Q99435
Human Protein AtlasENSG00000184613
HPRD11891
IPIIPI00015260   IPI00797539   IPI00795624   IPI01020825   IPI01021571   IPI01021725   IPI01021510   IPI01022247   IPI01022397   IPI01022003   IPI01022142   IPI01022907   IPI00922434   IPI00921881   
Protein Interaction databases
DIP (DOE-UCLA)Q99435
IntAct (EBI)Q99435
FunCoupENSG00000184613
REACTOMENELL2
Protein Interaction Database4753
BioGRIDNELL2
InParanoidQ99435
Interologous Interaction database Q99435
IntegromeDBNELL2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NELL2
SNP (GeneSNP Utah)NELL2
SNP : HGBaseNELL2
Genetic variants : HAPMAPNELL2
Somatic Mutations in Cancer : COSMICNELL2 
CONAN: Copy Number AnalysisNELL2 
Mutations and Diseases : HGMDNELL2
OMIM602320   
GENETests602320   
Disease Genetic AssociationNELL2
Huge Navigator NELL2 [HugePedia]  NELL2 [HugeCancerGEM]
Genomic VariantsNELL2  NELL2 [DGVbeta]
snp3D : Map Gene to Disease4753
General knowledge
Homologs : HomoloGeneNELL2
Homology/Alignments : Family Browser (UCSC)NELL2
Phylogenetic Trees/Animal Genes : TreeFamNELL2
Chemical/Protein Interactions : CTD4753
Chemical/Pharm GKB GenePA31553
Clinical trialNELL2
Cancer Resource (Charite)ENSG00000184613
Ontology : AmiGOstructural molecule activity  calcium ion binding  protein binding  extracellular region  cell adhesion  regulation of growth  
Ontology : EGO-EBIstructural molecule activity  calcium ion binding  protein binding  extracellular region  cell adhesion  regulation of growth  
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
PubGeneNELL2
iHOPNELL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:24:17 CEST 2013
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