Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NINL (ninein like)

Identity

Alias_symbol (synonym)KIAA0980
NLP
Other alias
HGNC (Hugo) NINL
LocusID (NCBI) 22981
Atlas_Id 50859
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 25452697 and ends at 25585531 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
H1F0 (22q13.1) / NINL (20p11.21)KIF3B (20q11.21) / NINL (20p11.21)NINL (20p11.21) / PGAM5 (12q24.33)
KIF3B 20q11.21 / NINL 20p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(20;20)(p11;q11) KIF3B/NINL

External links

Nomenclature
HGNC (Hugo)NINL   29163
Cards
Entrez_Gene (NCBI)NINL  22981  ninein like
AliasesNLP
GeneCards (Weizmann)NINL
Ensembl hg19 (Hinxton)ENSG00000101004 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101004 [Gene_View]  ENSG00000101004 [Sequence]  chr20:25452697-25585531 [Contig_View]  NINL [Vega]
ICGC DataPortalENSG00000101004
TCGA cBioPortalNINL
AceView (NCBI)NINL
Genatlas (Paris)NINL
WikiGenes22981
SOURCE (Princeton)NINL
Genetics Home Reference (NIH)NINL
Genomic and cartography
GoldenPath hg38 (UCSC)NINL  -     chr20:25452697-25585531 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NINL  -     20p11.21   [Description]    (hg19-Feb_2009)
GoldenPathNINL - 20p11.21 [CytoView hg19]  NINL - 20p11.21 [CytoView hg38]
ImmunoBaseENSG00000101004
Mapping of homologs : NCBININL [Mapview hg19]  NINL [Mapview hg38]
OMIM609580   
Gene and transcription
Genbank (Entrez)AB023197 AI024623 AK021854 AK093569 AK293991
RefSeq transcript (Entrez)NM_001318226 NM_025176
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NINL
Cluster EST : UnigeneHs.631508 [ NCBI ]
CGAP (NCI)Hs.631508
Alternative Splicing GalleryENSG00000101004
Gene ExpressionNINL [ NCBI-GEO ]   NINL [ EBI - ARRAY_EXPRESS ]   NINL [ SEEK ]   NINL [ MEM ]
Gene Expression Viewer (FireBrowse)NINL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22981
GTEX Portal (Tissue expression)NINL
Human Protein AtlasENSG00000101004-NINL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2I6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2I6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2I6
Splice isoforms : SwissVarQ9Y2I6
PhosPhoSitePlusQ9Y2I6
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)NINL
DMDM Disease mutations22981
Blocks (Seattle)NINL
SuperfamilyQ9Y2I6
Human Protein Atlas [tissue]ENSG00000101004-NINL [tissue]
Peptide AtlasQ9Y2I6
HPRD11120
IPIIPI00294173   IPI00028762   IPI00451469   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2I6
IntAct (EBI)Q9Y2I6
FunCoupENSG00000101004
BioGRIDNINL
STRING (EMBL)NINL
ZODIACNINL
Ontologies - Pathways
QuickGOQ9Y2I6
Ontology : AmiGOG2/M transition of mitotic cell cycle  calcium ion binding  protein binding  centrosome  cytosol  cytosol  microtubule  regulation of G2/M transition of mitotic cell cycle  microtubule anchoring at centrosome  intercellular bridge  ciliary basal body-plasma membrane docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  calcium ion binding  protein binding  centrosome  cytosol  cytosol  microtubule  regulation of G2/M transition of mitotic cell cycle  microtubule anchoring at centrosome  intercellular bridge  ciliary basal body-plasma membrane docking  
NDEx NetworkNINL
Atlas of Cancer Signalling NetworkNINL
Wikipedia pathwaysNINL
Orthology - Evolution
OrthoDB22981
GeneTree (enSembl)ENSG00000101004
Phylogenetic Trees/Animal Genes : TreeFamNINL
HOGENOMQ9Y2I6
Homologs : HomoloGeneNINL
Homology/Alignments : Family Browser (UCSC)NINL
Gene fusions - Rearrangements
Fusion : MitelmanKIF3B/NINL [20q11.21/20p11.21]  [t(20;20)(p11;q11)]  
Fusion PortalKIF3B 20q11.21 NINL 20p11.21 HNSC
Fusion : QuiverNINL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNINL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NINL
dbVarNINL
ClinVarNINL
1000_GenomesNINL 
Exome Variant ServerNINL
ExAC (Exome Aggregation Consortium)ENSG00000101004
GNOMAD BrowserENSG00000101004
Varsome BrowserNINL
Genetic variants : HAPMAP22981
Genomic Variants (DGV)NINL [DGVbeta]
DECIPHERNINL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNINL 
Mutations
ICGC Data PortalNINL 
TCGA Data PortalNINL 
Broad Tumor PortalNINL
OASIS PortalNINL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNINL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNINL
Mutations and Diseases : HGMDNINL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NINL
DgiDB (Drug Gene Interaction Database)NINL
DoCM (Curated mutations)NINL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NINL (select a term)
intoGenNINL
Cancer3DNINL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609580   
Orphanet
DisGeNETNINL
MedgenNINL
Genetic Testing Registry NINL
NextProtQ9Y2I6 [Medical]
TSGene22981
GENETestsNINL
Target ValidationNINL
Huge Navigator NINL [HugePedia]
snp3D : Map Gene to Disease22981
BioCentury BCIQNINL
ClinGenNINL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22981
Chemical/Pharm GKB GenePA165392435
Clinical trialNINL
Miscellaneous
canSAR (ICR)NINL (select the gene name)
DataMed IndexNINL
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNINL
EVEXNINL
GoPubMedNINL
iHOPNINL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:58:03 CET 2019
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