Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NKAPP1 (NFKB activating protein pseudogene 1)

Identity

Alias_namesCXorf42
chromosome X open reading frame 42
Alias_symbol (synonym)FLJ36576
Other alias
HGNC (Hugo) NKAPP1
LocusID (NCBI) 158801
Atlas_Id 70850
Location Xq24  [Link to chromosome band Xq24]
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NKAPP1   26706
Cards
Entrez_Gene (NCBI)NKAPP1  158801  NFKB activating protein pseudogene 1
AliasesCXorf42
GeneCards (Weizmann)NKAPP1
Ensembl hg19 (Hinxton)ENSG00000233382 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233382 [Gene_View]  ENSG00000233382 [Sequence]  - [Contig_View]  NKAPP1 [Vega]
ICGC DataPortalENSG00000233382
TCGA cBioPortalNKAPP1
AceView (NCBI)NKAPP1
Genatlas (Paris)NKAPP1
WikiGenes158801
SOURCE (Princeton)NKAPP1
Genetics Home Reference (NIH)NKAPP1
Genomic and cartography
GoldenPath hg38 (UCSC)NKAPP1  -  
GoldenPath hg19 (UCSC)NKAPP1  -  
GoldenPathNKAPP1 - [CytoView hg19]  NKAPP1 - [CytoView hg38]
ImmunoBaseENSG00000233382
genome Data Viewer NCBINKAPP1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093895 BC022359 BC113730 BC113732 BX537594
RefSeq transcript (Entrez)NM_173522
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NKAPP1
Alternative Splicing GalleryENSG00000233382
Gene ExpressionNKAPP1 [ NCBI-GEO ]   NKAPP1 [ EBI - ARRAY_EXPRESS ]   NKAPP1 [ SEEK ]   NKAPP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NKAPP1 [ Firebrowse - Broad ]
GenevisibleExpression of NKAPP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158801
GTEX Portal (Tissue expression)NKAPP1
Human Protein AtlasENSG00000233382-NKAPP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9T2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9T2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9T2
Splice isoforms : SwissVarQ8N9T2
PhosPhoSitePlusQ8N9T2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NKAPP1
DMDM Disease mutations158801
Blocks (Seattle)NKAPP1
SuperfamilyQ8N9T2
Human Protein Atlas [tissue]ENSG00000233382-NKAPP1 [tissue]
Peptide AtlasQ8N9T2
HPRD06560
IPIIPI00167805   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9T2
IntAct (EBI)Q8N9T2
FunCoupENSG00000233382
BioGRIDNKAPP1
STRING (EMBL)NKAPP1
ZODIACNKAPP1
Ontologies - Pathways
QuickGOQ8N9T2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNKAPP1
Atlas of Cancer Signalling NetworkNKAPP1
Wikipedia pathwaysNKAPP1
Orthology - Evolution
OrthoDB158801
GeneTree (enSembl)ENSG00000233382
Phylogenetic Trees/Animal Genes : TreeFamNKAPP1
HOGENOMQ8N9T2
Homologs : HomoloGeneNKAPP1
Homology/Alignments : Family Browser (UCSC)NKAPP1
Gene fusions - Rearrangements
Fusion : QuiverNKAPP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNKAPP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NKAPP1
dbVarNKAPP1
ClinVarNKAPP1
1000_GenomesNKAPP1 
Exome Variant ServerNKAPP1
GNOMAD BrowserENSG00000233382
Varsome BrowserNKAPP1
Genetic variants : HAPMAP158801
Genomic Variants (DGV)NKAPP1 [DGVbeta]
DECIPHERNKAPP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNKAPP1 
Mutations
ICGC Data PortalNKAPP1 
TCGA Data PortalNKAPP1 
Broad Tumor PortalNKAPP1
OASIS PortalNKAPP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNKAPP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NKAPP1
DgiDB (Drug Gene Interaction Database)NKAPP1
DoCM (Curated mutations)NKAPP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NKAPP1 (select a term)
intoGenNKAPP1
Cancer3DNKAPP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNKAPP1
MedgenNKAPP1
Genetic Testing Registry NKAPP1
NextProtQ8N9T2 [Medical]
TSGene158801
GENETestsNKAPP1
Target ValidationNKAPP1
Huge Navigator NKAPP1 [HugePedia]
snp3D : Map Gene to Disease158801
BioCentury BCIQNKAPP1
ClinGenNKAPP1
Clinical trials, drugs, therapy
Protein Interactions : CTD158801
Pharm GKB GenePA134907845
Clinical trialNKAPP1
Miscellaneous
canSAR (ICR)NKAPP1 (select the gene name)
HarmonizomeNKAPP1
DataMed IndexNKAPP1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNKAPP1
EVEXNKAPP1
GoPubMedNKAPP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jul 10 20:27:53 CEST 2020
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