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NNAT (neuronatin)

Identity

Alias (NCBI)Peg5
HGNC (Hugo) NNAT
HGNC Alias symbPeg5
LocusID (NCBI) 4826
Atlas_Id 46292
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 37521250 and ends at 37523688 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NNAT (20q11.23) / RPN2 (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NNAT   7860
LRG (Locus Reference Genomic)LRG_1048
Cards
Entrez_Gene (NCBI)NNAT  4826  neuronatin
AliasesPeg5
GeneCards (Weizmann)NNAT
Ensembl hg19 (Hinxton)ENSG00000053438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000053438 [Gene_View]  ENSG00000053438 [Sequence]  chr20:37521250-37523688 [Contig_View]  NNAT [Vega]
ICGC DataPortalENSG00000053438
TCGA cBioPortalNNAT
AceView (NCBI)NNAT
Genatlas (Paris)NNAT
WikiGenes4826
SOURCE (Princeton)NNAT
Genetics Home Reference (NIH)NNAT
Genomic and cartography
GoldenPath hg38 (UCSC)NNAT  -     chr20:37521250-37523688 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NNAT  -     20q11.23   [Description]    (hg19-Feb_2009)
GoldenPathNNAT - 20q11.23 [CytoView hg19]  NNAT - 20q11.23 [CytoView hg38]
ImmunoBaseENSG00000053438
genome Data Viewer NCBINNAT [Mapview hg19]  
OMIM603106   
Gene and transcription
Genbank (Entrez)AB002392 AI879211 AK312069 BC001768 BE255132
RefSeq transcript (Entrez)NM_001322802 NM_005386 NM_181689
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NNAT
Alternative Splicing GalleryENSG00000053438
Gene ExpressionNNAT [ NCBI-GEO ]   NNAT [ EBI - ARRAY_EXPRESS ]   NNAT [ SEEK ]   NNAT [ MEM ]
Gene Expression Viewer (FireBrowse)NNAT [ Firebrowse - Broad ]
GenevisibleExpression of NNAT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4826
GTEX Portal (Tissue expression)NNAT
Human Protein AtlasENSG00000053438-NNAT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16517   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16517  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16517
Splice isoforms : SwissVarQ16517
PhosPhoSitePlusQ16517
Domains : Interpro (EBI)Neuronatin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NNAT
DMDM Disease mutations4826
Blocks (Seattle)NNAT
SuperfamilyQ16517
Human Protein Atlas [tissue]ENSG00000053438-NNAT [tissue]
Peptide AtlasQ16517
HPRD04377
IPIIPI00002808   IPI00220319   IPI00980679   
Protein Interaction databases
DIP (DOE-UCLA)Q16517
IntAct (EBI)Q16517
FunCoupENSG00000053438
BioGRIDNNAT
STRING (EMBL)NNAT
ZODIACNNAT
Ontologies - Pathways
QuickGOQ16517
Ontology : AmiGOcytoplasm  brain development  protein lipoylation  neuron differentiation  positive regulation of insulin secretion  
Ontology : EGO-EBIcytoplasm  brain development  protein lipoylation  neuron differentiation  positive regulation of insulin secretion  
NDEx NetworkNNAT
Atlas of Cancer Signalling NetworkNNAT
Wikipedia pathwaysNNAT
Orthology - Evolution
OrthoDB4826
GeneTree (enSembl)ENSG00000053438
Phylogenetic Trees/Animal Genes : TreeFamNNAT
HOGENOMQ16517
Homologs : HomoloGeneNNAT
Homology/Alignments : Family Browser (UCSC)NNAT
Gene fusions - Rearrangements
Fusion : QuiverNNAT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNNAT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NNAT
dbVarNNAT
ClinVarNNAT
1000_GenomesNNAT 
Exome Variant ServerNNAT
GNOMAD BrowserENSG00000053438
Varsome BrowserNNAT
Genetic variants : HAPMAP4826
Genomic Variants (DGV)NNAT [DGVbeta]
DECIPHERNNAT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNNAT 
Mutations
ICGC Data PortalNNAT 
TCGA Data PortalNNAT 
Broad Tumor PortalNNAT
OASIS PortalNNAT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNNAT  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNNAT
Mutations and Diseases : HGMDNNAT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NNAT
DgiDB (Drug Gene Interaction Database)NNAT
DoCM (Curated mutations)NNAT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NNAT (select a term)
intoGenNNAT
Cancer3DNNAT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603106   
Orphanet
DisGeNETNNAT
MedgenNNAT
Genetic Testing Registry NNAT
NextProtQ16517 [Medical]
TSGene4826
GENETestsNNAT
Target ValidationNNAT
Huge Navigator NNAT [HugePedia]
snp3D : Map Gene to Disease4826
BioCentury BCIQNNAT
ClinGenNNAT (curated)
Clinical trials, drugs, therapy
Protein Interactions : CTD4826
Pharm GKB GenePA31665
Clinical trialNNAT
Miscellaneous
canSAR (ICR)NNAT (select the gene name)
HarmonizomeNNAT
DataMed IndexNNAT
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNNAT
EVEXNNAT
GoPubMedNNAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:27:25 CEST 2020
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