Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NOL11 (nucleolar protein 11)

Identity

Alias_symbol (synonym)DKFZP586L0724
Other alias-
HGNC (Hugo) NOL11
LocusID (NCBI) 25926
Atlas_Id 70896
Location 17q24.2  [Link to chromosome band 17q24]
Location_base_pair Starts at 67717833 and ends at 67744208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NOL11 (17q24.2) / CARD11 (7p22.2)NOL11 (17q24.2) / HSF5 (17q22)NOL11 (17q24.2) / RRP9 (3p21.2)
NOL11 (17q24.2) / ZNF510 (9q22.33)NOL11 HSF5NOL11 CARD11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(7;17)(p22;q24) NOL11/CARD11
t(17;17)(q22;q24) NOL11/HSF5

External links

Nomenclature
HGNC (Hugo)NOL11   24557
Cards
Entrez_Gene (NCBI)NOL11  25926  nucleolar protein 11
Aliases
GeneCards (Weizmann)NOL11
Ensembl hg19 (Hinxton)ENSG00000130935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130935 [Gene_View]  ENSG00000130935 [Sequence]  chr17:67717833-67744208 [Contig_View]  NOL11 [Vega]
ICGC DataPortalENSG00000130935
TCGA cBioPortalNOL11
AceView (NCBI)NOL11
Genatlas (Paris)NOL11
WikiGenes25926
SOURCE (Princeton)NOL11
Genetics Home Reference (NIH)NOL11
Genomic and cartography
GoldenPath hg38 (UCSC)NOL11  -     chr17:67717833-67744208 +  17q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOL11  -     17q24.2   [Description]    (hg19-Feb_2009)
GoldenPathNOL11 - 17q24.2 [CytoView hg19]  NOL11 - 17q24.2 [CytoView hg38]
ImmunoBaseENSG00000130935
Mapping of homologs : NCBINOL11 [Mapview hg19]  NOL11 [Mapview hg38]
OMIM615366   
Gene and transcription
Genbank (Entrez)AK023702 AK025390 AK299483 AL110271 AW273123
RefSeq transcript (Entrez)NM_001303272 NM_015462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOL11
Alternative Splicing GalleryENSG00000130935
Gene ExpressionNOL11 [ NCBI-GEO ]   NOL11 [ EBI - ARRAY_EXPRESS ]   NOL11 [ SEEK ]   NOL11 [ MEM ]
Gene Expression Viewer (FireBrowse)NOL11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25926
GTEX Portal (Tissue expression)NOL11
Human Protein AtlasENSG00000130935-NOL11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8H0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8H0
Splice isoforms : SwissVarQ9H8H0
PhosPhoSitePlusQ9H8H0
Domains : Interpro (EBI)NOL11    NUC205    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)NUC205 (PF08168)   
Domain families : Pfam (NCBI)pfam08168   
Conserved Domain (NCBI)NOL11
DMDM Disease mutations25926
Blocks (Seattle)NOL11
SuperfamilyQ9H8H0
Human Protein Atlas [tissue]ENSG00000130935-NOL11 [tissue]
Peptide AtlasQ9H8H0
HPRD10900
IPIIPI00303813   IPI01015921   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8H0
IntAct (EBI)Q9H8H0
FunCoupENSG00000130935
BioGRIDNOL11
STRING (EMBL)NOL11
ZODIACNOL11
Ontologies - Pathways
QuickGOQ9H8H0
Ontology : AmiGORNA binding  protein binding  nucleoplasm  nucleolus  rRNA processing  maturation of SSU-rRNA  t-UTP complex  positive regulation of transcription of nucleolar large rRNA by RNA polymerase I  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  nucleolus  rRNA processing  maturation of SSU-rRNA  t-UTP complex  positive regulation of transcription of nucleolar large rRNA by RNA polymerase I  
NDEx NetworkNOL11
Atlas of Cancer Signalling NetworkNOL11
Wikipedia pathwaysNOL11
Orthology - Evolution
OrthoDB25926
GeneTree (enSembl)ENSG00000130935
Phylogenetic Trees/Animal Genes : TreeFamNOL11
HOGENOMQ9H8H0
Homologs : HomoloGeneNOL11
Homology/Alignments : Family Browser (UCSC)NOL11
Gene fusions - Rearrangements
Fusion PortalNOL11 HSF5
Fusion PortalNOL11 CARD11
Fusion : QuiverNOL11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOL11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOL11
dbVarNOL11
ClinVarNOL11
1000_GenomesNOL11 
Exome Variant ServerNOL11
ExAC (Exome Aggregation Consortium)ENSG00000130935
GNOMAD BrowserENSG00000130935
Varsome BrowserNOL11
Genetic variants : HAPMAP25926
Genomic Variants (DGV)NOL11 [DGVbeta]
DECIPHERNOL11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOL11 
Mutations
ICGC Data PortalNOL11 
TCGA Data PortalNOL11 
Broad Tumor PortalNOL11
OASIS PortalNOL11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOL11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNOL11
Mutations and Diseases : HGMDNOL11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOL11
DgiDB (Drug Gene Interaction Database)NOL11
DoCM (Curated mutations)NOL11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOL11 (select a term)
intoGenNOL11
Cancer3DNOL11(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615366   
Orphanet
DisGeNETNOL11
MedgenNOL11
Genetic Testing Registry NOL11
NextProtQ9H8H0 [Medical]
TSGene25926
GENETestsNOL11
Target ValidationNOL11
Huge Navigator NOL11 [HugePedia]
snp3D : Map Gene to Disease25926
BioCentury BCIQNOL11
ClinGenNOL11
Clinical trials, drugs, therapy
Protein Interactions : CTD25926
Pharm GKB GenePA142671258
Clinical trialNOL11
Miscellaneous
canSAR (ICR)NOL11 (select the gene name)
HarmonizomeNOL11
DataMed IndexNOL11
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOL11
EVEXNOL11
GoPubMedNOL11
iHOPNOL11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Jun 30 19:55:58 CEST 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.