| Nomenclature |
HGNC (Hugo) | NPAS1 7894 |
| Cards |
Entrez_Gene (NCBI) | NPAS1 neuronal PAS domain protein 1 |
Aliases | MOP5; PASD5; bHLHe11 |
GeneCards (Weizmann) | NPAS1 |
Ensembl hg19 (Hinxton) | ENSG00000130751 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000130751 [Gene_View]  ENSG00000130751 [Sequence] chr19:47019844-47045775 [Contig_View] NPAS1 [Vega] |
ICGC DataPortal | ENSG00000130751 |
TCGA cBioPortal | NPAS1 |
AceView (NCBI) | NPAS1 |
Genatlas (Paris) | NPAS1 |
SOURCE (Princeton) | NPAS1 |
Genetics Home Reference (NIH) | NPAS1 |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | NPAS1 - chr19:47019844-47045775 + 19q13.32 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | NPAS1 - 19q13.32 [Description] (hg19-Feb_2009) |
GoldenPath | NPAS1 - 19q13.32 [CytoView hg19] NPAS1 - 19q13.32 [CytoView hg38] |
ImmunoBase | ENSG00000130751 |
genome Data Viewer NCBI | NPAS1 [Mapview hg19] |
OMIM | 603346 |
| Gene and transcription |
Genbank (Entrez) | AB054002 AK299128 BC039016 CA420408 U51628 |
RefSeq transcript (Entrez) | NM_001321086 NM_002517 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | NPAS1 |
Alternative Splicing Gallery | ENSG00000130751 |
Gene Expression | NPAS1 [ NCBI-GEO ] NPAS1 [ EBI - ARRAY_EXPRESS ]
NPAS1 [ SEEK ] NPAS1 [ MEM ] |
Gene Expression Viewer (FireBrowse) | NPAS1 [ Firebrowse - Broad ] |
Genevisible | Expression of NPAS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 4861 |
GTEX Portal (Tissue expression) | NPAS1 |
Human Protein Atlas | ENSG00000130751-NPAS1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q99742 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q99742 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q99742 |
Splice isoforms : SwissVar | Q99742 |
PhosPhoSitePlus | Q99742 |
Domaine pattern : Prosite (Expaxy) | BHLH (PS50888) PAS (PS50112) |
Domains : Interpro (EBI) | bHLH_dom HLH_DNA-bd_sf PAS PAS-like_dom_sf PAS_fold PAS_fold_3 |
Domain families : Pfam (Sanger) | HLH (PF00010) PAS (PF00989) PAS_3 (PF08447) |
Domain families : Pfam (NCBI) | pfam00010 pfam00989 pfam08447 |
Domain families : Smart (EMBL) | HLH (SM00353) PAS (SM00091) |
Conserved Domain (NCBI) | NPAS1 |
Blocks (Seattle) | NPAS1 |
Superfamily | Q99742 |
Human Protein Atlas [tissue] | ENSG00000130751-NPAS1 [tissue] |
Peptide Atlas | Q99742 |
HPRD | 09136 |
IPI | IPI00293815 IPI00910071 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q99742 |
IntAct (EBI) | Q99742 |
BioGRID | NPAS1 |
STRING (EMBL) | NPAS1 |
ZODIAC | NPAS1 |
| Ontologies - Pathways |
QuickGO | Q99742 |
Ontology : AmiGO | negative regulation of transcription by RNA polymerase II nuclear chromatin DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific startle response DNA binding DNA-binding transcription factor activity nucleus regulation of transcription by RNA polymerase II central nervous system development maternal behavior negative regulation of transcription, DNA-templated positive regulation of transcription by RNA polymerase II protein heterodimerization activity |
Ontology : EGO-EBI | negative regulation of transcription by RNA polymerase II nuclear chromatin DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific startle response DNA binding DNA-binding transcription factor activity nucleus regulation of transcription by RNA polymerase II central nervous system development maternal behavior negative regulation of transcription, DNA-templated positive regulation of transcription by RNA polymerase II protein heterodimerization activity |
NDEx Network | NPAS1 |
Atlas of Cancer Signalling Network | NPAS1 |
Wikipedia pathways | NPAS1 |
| Orthology - Evolution |
OrthoDB | 4861 |
GeneTree (enSembl) | ENSG00000130751 |
Phylogenetic Trees/Animal Genes : TreeFam | NPAS1 |
HOGENOM | Q99742 |
Homologs : HomoloGene | NPAS1 |
Homology/Alignments : Family Browser (UCSC) | NPAS1 |
| Gene fusions - Rearrangements |
Fusion : Quiver | NPAS1 |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | NPAS1 [hg38] |
dbVar | NPAS1 |
ClinVar | NPAS1 |
Monarch | NPAS1 |
1000_Genomes | NPAS1 |
Exome Variant Server | NPAS1 |
GNOMAD Browser | ENSG00000130751 |
Varsome Browser | NPAS1 |
Genomic Variants (DGV) | NPAS1 [DGVbeta] |
DECIPHER | NPAS1 [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | NPAS1 |
| Mutations |
ICGC Data Portal | NPAS1 |
TCGA Data Portal | NPAS1 |
Broad Tumor Portal | NPAS1 |
OASIS Portal | NPAS1 [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | NPAS1 [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | NPAS1 |
Mutations and Diseases : HGMD | NPAS1 |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search NPAS1 |
DgiDB (Drug Gene Interaction Database) | NPAS1 |
DoCM (Curated mutations) | NPAS1 (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | NPAS1 (select a term) |
intoGen | NPAS1 |
Cancer3D | NPAS1(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
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OMIM | 603346 |
Orphanet | |
DisGeNET | NPAS1 |
Medgen | NPAS1 |
Genetic Testing Registry | NPAS1
|
NextProt | Q99742 [Medical] |
GENETests | NPAS1 |
Target Validation | NPAS1 |
Huge Navigator |
NPAS1 [HugePedia] |
ClinGen | NPAS1 |
| Clinical trials, drugs, therapy |
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MyCancerGenome | NPAS1 |
Protein Interactions : CTD | |
Pharm GKB Gene | PA31695 |
Clinical trial | NPAS1 |
| Miscellaneous |
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canSAR (ICR) | NPAS1 (select the gene name) |
Harmonizome | NPAS1 |
DataMed Index | NPAS1 |
| Probes |
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| Litterature |
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PubMed | 10 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
CoreMine | NPAS1 |
EVEX | NPAS1 |
GoPubMed | NPAS1 |