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NRARP (NOTCH regulated ankyrin repeat protein)

Identity

Alias_symbol (synonym)MGC61598
Other alias-
HGNC (Hugo) NRARP
LocusID (NCBI) 441478
Atlas_Id 53695
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137299631 and ends at 137302271 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRARP   33843
Cards
Entrez_Gene (NCBI)NRARP  441478  NOTCH regulated ankyrin repeat protein
Aliases
GeneCards (Weizmann)NRARP
Ensembl hg19 (Hinxton)ENSG00000198435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198435 [Gene_View]  ENSG00000198435 [Sequence]  chr9:137299631-137302271 [Contig_View]  NRARP [Vega]
ICGC DataPortalENSG00000198435
TCGA cBioPortalNRARP
AceView (NCBI)NRARP
Genatlas (Paris)NRARP
WikiGenes441478
SOURCE (Princeton)NRARP
Genetics Home Reference (NIH)NRARP
Genomic and cartography
GoldenPath hg38 (UCSC)NRARP  -     chr9:137299631-137302271 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRARP  -     9q34.3   [Description]    (hg19-Feb_2009)
GoldenPathNRARP - 9q34.3 [CytoView hg19]  NRARP - 9q34.3 [CytoView hg38]
Genome Data Viewer NCBINRARP [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ420434 BC053618 CB066921 CB132749 CK819901
RefSeq transcript (Entrez)NM_001004354
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRARP
Alternative Splicing GalleryENSG00000198435
Gene ExpressionNRARP [ NCBI-GEO ]   NRARP [ EBI - ARRAY_EXPRESS ]   NRARP [ SEEK ]   NRARP [ MEM ]
Gene Expression Viewer (FireBrowse)NRARP [ Firebrowse - Broad ]
GenevisibleExpression of NRARP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441478
GTEX Portal (Tissue expression)NRARP
Human Protein AtlasENSG00000198435-NRARP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6K4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6K4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6K4
Splice isoforms : SwissVarQ7Z6K4
PhosPhoSitePlusQ7Z6K4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)NRARP
DMDM Disease mutations441478
PDB (RSDB)6PY8   
PDB Europe6PY8   
PDB (PDBSum)6PY8   
PDB (IMB)6PY8   
Structural Biology KnowledgeBase6PY8   
SCOP (Structural Classification of Proteins)6PY8   
CATH (Classification of proteins structures)6PY8   
SuperfamilyQ7Z6K4
Human Protein Atlas [tissue]ENSG00000198435-NRARP [tissue]
Peptide AtlasQ7Z6K4
HPRD17564
IPIIPI00456834   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6K4
IntAct (EBI)Q7Z6K4
FunCoupENSG00000198435
BioGRIDNRARP
STRING (EMBL)NRARP
ZODIACNRARP
Ontologies - Pathways
QuickGOQ7Z6K4
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  branching involved in blood vessel morphogenesis  positive regulation of endothelial cell proliferation  blood vessel endothelial cell proliferation involved in sprouting angiogenesis  Notch signaling pathway  somite rostral/caudal axis specification  negative regulation of T cell differentiation  negative regulation of Notch signaling pathway  negative regulation of Notch signaling pathway  positive regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  negative regulation of Notch signaling pathway involved in somitogenesis  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  branching involved in blood vessel morphogenesis  positive regulation of endothelial cell proliferation  blood vessel endothelial cell proliferation involved in sprouting angiogenesis  Notch signaling pathway  somite rostral/caudal axis specification  negative regulation of T cell differentiation  negative regulation of Notch signaling pathway  negative regulation of Notch signaling pathway  positive regulation of canonical Wnt signaling pathway  positive regulation of canonical Wnt signaling pathway  negative regulation of Notch signaling pathway involved in somitogenesis  
NDEx NetworkNRARP
Atlas of Cancer Signalling NetworkNRARP
Wikipedia pathwaysNRARP
Orthology - Evolution
OrthoDB441478
GeneTree (enSembl)ENSG00000198435
Phylogenetic Trees/Animal Genes : TreeFamNRARP
HOGENOMQ7Z6K4
Homologs : HomoloGeneNRARP
Homology/Alignments : Family Browser (UCSC)NRARP
Gene fusions - Rearrangements
Fusion : QuiverNRARP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRARP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRARP
dbVarNRARP
ClinVarNRARP
1000_GenomesNRARP 
Exome Variant ServerNRARP
GNOMAD BrowserENSG00000198435
Varsome BrowserNRARP
Genetic variants : HAPMAP441478
Genomic Variants (DGV)NRARP [DGVbeta]
DECIPHERNRARP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRARP 
Mutations
ICGC Data PortalNRARP 
TCGA Data PortalNRARP 
Broad Tumor PortalNRARP
OASIS PortalNRARP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRARP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNRARP
Mutations and Diseases : HGMDNRARP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutaselect NRARP
DgiDB (Drug Gene Interaction Database)NRARP
DoCM (Curated mutations)NRARP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRARP (select a term)
intoGenNRARP
Cancer3DNRARP (select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNRARP
MedgenNRARP
Genetic Testing Registry NRARP
NextProtQ7Z6K4 [Medical]
TSGene441478
GENETestsNRARP
Open Targets GeneticsENSG00000198435  [validation]
snp3D : Map Gene to Disease441478
BioCentury BCIQNRARP
ClinGenNRARP
Clinical trials, drugs, therapy
Protein Interactions : CTD441478
Pharm GKB GenePA164724205
Clinical trialNRARP
Miscellaneous
canSAR (ICR)NRARP (select the gene name)
HarmonizomeNRARP
DataMed IndexNRARP
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRARP
EVEXNRARP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Jul 11 20:02:56 CEST 2020

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