Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NSUN7 (NOP2/Sun RNA methyltransferase family member 7)

Identity

Alias_namesNOL1/NOP2/Sun domain family, member 7
NOP2/Sun domain family, member 7
Alias_symbol (synonym)FLJ14001
Other alias-
HGNC (Hugo) NSUN7
LocusID (NCBI) 79730
Atlas_Id 70994
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 40749897 and ends at 40811182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APBB2 (4p14) / NSUN7 (4p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NSUN7   25857
Cards
Entrez_Gene (NCBI)NSUN7  79730  NOP2/Sun RNA methyltransferase family member 7
Aliases
GeneCards (Weizmann)NSUN7
Ensembl hg19 (Hinxton)ENSG00000179299 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179299 [Gene_View]  ENSG00000179299 [Sequence]  chr4:40749897-40811182 [Contig_View]  NSUN7 [Vega]
ICGC DataPortalENSG00000179299
TCGA cBioPortalNSUN7
AceView (NCBI)NSUN7
Genatlas (Paris)NSUN7
WikiGenes79730
SOURCE (Princeton)NSUN7
Genetics Home Reference (NIH)NSUN7
Genomic and cartography
GoldenPath hg38 (UCSC)NSUN7  -     chr4:40749897-40811182 +  4p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSUN7  -     4p14   [Description]    (hg19-Feb_2009)
GoldenPathNSUN7 - 4p14 [CytoView hg19]  NSUN7 - 4p14 [CytoView hg38]
ImmunoBaseENSG00000179299
Mapping of homologs : NCBINSUN7 [Mapview hg19]  NSUN7 [Mapview hg38]
OMIM617185   
Gene and transcription
Genbank (Entrez)AA757043 AK024063 AK094298 AK304048 BC036568
RefSeq transcript (Entrez)NM_001330648 NM_024677
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSUN7
Cluster EST : UnigeneHs.720643 [ NCBI ]
CGAP (NCI)Hs.720643
Alternative Splicing GalleryENSG00000179299
Gene ExpressionNSUN7 [ NCBI-GEO ]   NSUN7 [ EBI - ARRAY_EXPRESS ]   NSUN7 [ SEEK ]   NSUN7 [ MEM ]
Gene Expression Viewer (FireBrowse)NSUN7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79730
GTEX Portal (Tissue expression)NSUN7
Human Protein AtlasENSG00000179299-NSUN7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE18
Splice isoforms : SwissVarQ8NE18
PhosPhoSitePlusQ8NE18
Domaine pattern : Prosite (Expaxy)SAM_MT_RSMB_NOP (PS51686)   
Domains : Interpro (EBI)MeTrfase_RsmB/NOP2    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltr_RsmB-F (PF01189)   
Domain families : Pfam (NCBI)pfam01189   
Conserved Domain (NCBI)NSUN7
DMDM Disease mutations79730
Blocks (Seattle)NSUN7
SuperfamilyQ8NE18
Human Protein Atlas [tissue]ENSG00000179299-NSUN7 [tissue]
Peptide AtlasQ8NE18
HPRD07846
IPIIPI00973265   IPI00745617   IPI00220167   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE18
IntAct (EBI)Q8NE18
FunCoupENSG00000179299
BioGRIDNSUN7
STRING (EMBL)NSUN7
ZODIACNSUN7
Ontologies - Pathways
QuickGOQ8NE18
Ontology : AmiGORNA binding  methyltransferase activity  methylation  
Ontology : EGO-EBIRNA binding  methyltransferase activity  methylation  
NDEx NetworkNSUN7
Atlas of Cancer Signalling NetworkNSUN7
Wikipedia pathwaysNSUN7
Orthology - Evolution
OrthoDB79730
GeneTree (enSembl)ENSG00000179299
Phylogenetic Trees/Animal Genes : TreeFamNSUN7
HOGENOMQ8NE18
Homologs : HomoloGeneNSUN7
Homology/Alignments : Family Browser (UCSC)NSUN7
Gene fusions - Rearrangements
Fusion : QuiverNSUN7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSUN7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSUN7
dbVarNSUN7
ClinVarNSUN7
1000_GenomesNSUN7 
Exome Variant ServerNSUN7
ExAC (Exome Aggregation Consortium)ENSG00000179299
GNOMAD BrowserENSG00000179299
Varsome BrowserNSUN7
Genetic variants : HAPMAP79730
Genomic Variants (DGV)NSUN7 [DGVbeta]
DECIPHERNSUN7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSUN7 
Mutations
ICGC Data PortalNSUN7 
TCGA Data PortalNSUN7 
Broad Tumor PortalNSUN7
OASIS PortalNSUN7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSUN7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNSUN7
Mutations and Diseases : HGMDNSUN7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSUN7
DgiDB (Drug Gene Interaction Database)NSUN7
DoCM (Curated mutations)NSUN7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSUN7 (select a term)
intoGenNSUN7
Cancer3DNSUN7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617185   
Orphanet
DisGeNETNSUN7
MedgenNSUN7
Genetic Testing Registry NSUN7
NextProtQ8NE18 [Medical]
TSGene79730
GENETestsNSUN7
Target ValidationNSUN7
Huge Navigator NSUN7 [HugePedia]
snp3D : Map Gene to Disease79730
BioCentury BCIQNSUN7
ClinGenNSUN7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79730
Chemical/Pharm GKB GenePA145007896
Clinical trialNSUN7
Miscellaneous
canSAR (ICR)NSUN7 (select the gene name)
DataMed IndexNSUN7
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSUN7
EVEXNSUN7
GoPubMedNSUN7
iHOPNSUN7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:58:14 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.