Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NT5DC3 (5'-nucleotidase domain containing 3)

Identity

Alias_symbol (synonym)TU12B1-TY
FLJ11266
Other aliasTU12B1TY
HGNC (Hugo) NT5DC3
LocusID (NCBI) 51559
Atlas_Id 46205
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 103772303 and ends at 103841197 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NT5DC3   30826
Cards
Entrez_Gene (NCBI)NT5DC3  51559  5'-nucleotidase domain containing 3
AliasesTU12B1-TY; TU12B1TY
GeneCards (Weizmann)NT5DC3
Ensembl hg19 (Hinxton)ENSG00000111696 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111696 [Gene_View]  ENSG00000111696 [Sequence]  chr12:103772303-103841197 [Contig_View]  NT5DC3 [Vega]
ICGC DataPortalENSG00000111696
TCGA cBioPortalNT5DC3
AceView (NCBI)NT5DC3
Genatlas (Paris)NT5DC3
WikiGenes51559
SOURCE (Princeton)NT5DC3
Genetics Home Reference (NIH)NT5DC3
Genomic and cartography
GoldenPath hg38 (UCSC)NT5DC3  -     chr12:103772303-103841197 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NT5DC3  -     12q23.3   [Description]    (hg19-Feb_2009)
GoldenPathNT5DC3 - 12q23.3 [CytoView hg19]  NT5DC3 - 12q23.3 [CytoView hg38]
ImmunoBaseENSG00000111696
Mapping of homologs : NCBINT5DC3 [Mapview hg19]  NT5DC3 [Mapview hg38]
OMIM611076   
Gene and transcription
Genbank (Entrez)AB032773 AK002128 BC052293
RefSeq transcript (Entrez)NM_001031701 NM_016575
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NT5DC3
Cluster EST : UnigeneHs.48428 [ NCBI ]
CGAP (NCI)Hs.48428
Alternative Splicing GalleryENSG00000111696
Gene ExpressionNT5DC3 [ NCBI-GEO ]   NT5DC3 [ EBI - ARRAY_EXPRESS ]   NT5DC3 [ SEEK ]   NT5DC3 [ MEM ]
Gene Expression Viewer (FireBrowse)NT5DC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51559
GTEX Portal (Tissue expression)NT5DC3
Human Protein AtlasENSG00000111696-NT5DC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UY8
Splice isoforms : SwissVarQ86UY8
PhosPhoSitePlusQ86UY8
Domains : Interpro (EBI)HAD-like_sf    HAD-SF_hydro_IG_5-nucl    HAD_sf    Pur_nucleotidase   
Domain families : Pfam (Sanger)5_nucleotid (PF05761)   
Domain families : Pfam (NCBI)pfam05761   
Conserved Domain (NCBI)NT5DC3
DMDM Disease mutations51559
Blocks (Seattle)NT5DC3
SuperfamilyQ86UY8
Human Protein Atlas [tissue]ENSG00000111696-NT5DC3 [tissue]
Peptide AtlasQ86UY8
HPRD18241
IPIIPI00465170   IPI00642386   IPI00927948   IPI00927239   
Protein Interaction databases
DIP (DOE-UCLA)Q86UY8
IntAct (EBI)Q86UY8
FunCoupENSG00000111696
BioGRIDNT5DC3
STRING (EMBL)NT5DC3
ZODIACNT5DC3
Ontologies - Pathways
QuickGOQ86UY8
Ontology : AmiGO5'-nucleotidase activity  dephosphorylation  receptor complex  metal ion binding  
Ontology : EGO-EBI5'-nucleotidase activity  dephosphorylation  receptor complex  metal ion binding  
NDEx NetworkNT5DC3
Atlas of Cancer Signalling NetworkNT5DC3
Wikipedia pathwaysNT5DC3
Orthology - Evolution
OrthoDB51559
GeneTree (enSembl)ENSG00000111696
Phylogenetic Trees/Animal Genes : TreeFamNT5DC3
HOGENOMQ86UY8
Homologs : HomoloGeneNT5DC3
Homology/Alignments : Family Browser (UCSC)NT5DC3
Gene fusions - Rearrangements
Fusion : QuiverNT5DC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNT5DC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NT5DC3
dbVarNT5DC3
ClinVarNT5DC3
1000_GenomesNT5DC3 
Exome Variant ServerNT5DC3
ExAC (Exome Aggregation Consortium)ENSG00000111696
GNOMAD BrowserENSG00000111696
Varsome BrowserNT5DC3
Genetic variants : HAPMAP51559
Genomic Variants (DGV)NT5DC3 [DGVbeta]
DECIPHERNT5DC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNT5DC3 
Mutations
ICGC Data PortalNT5DC3 
TCGA Data PortalNT5DC3 
Broad Tumor PortalNT5DC3
OASIS PortalNT5DC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNT5DC3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNT5DC3
Mutations and Diseases : HGMDNT5DC3
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch NT5DC3
DgiDB (Drug Gene Interaction Database)NT5DC3
DoCM (Curated mutations)NT5DC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NT5DC3 (select a term)
intoGenNT5DC3
Cancer3DNT5DC3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611076   
Orphanet
DisGeNETNT5DC3
MedgenNT5DC3
Genetic Testing Registry NT5DC3
NextProtQ86UY8 [Medical]
TSGene51559
GENETestsNT5DC3
Target ValidationNT5DC3
Huge Navigator NT5DC3 [HugePedia]
snp3D : Map Gene to Disease51559
BioCentury BCIQNT5DC3
ClinGenNT5DC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51559
Chemical/Pharm GKB GenePA143485562
Clinical trialNT5DC3
Miscellaneous
canSAR (ICR)NT5DC3 (select the gene name)
DataMed IndexNT5DC3
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNT5DC3
EVEXNT5DC3
GoPubMedNT5DC3
iHOPNT5DC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:58:44 CET 2019
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