Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NUDT5 (nudix hydrolase 5)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 5
Alias_symbol (synonym)hYSAH1
YSA1H
Other aliasYSA1
YSAH1
hNUDT5
HGNC (Hugo) NUDT5
LocusID (NCBI) 11164
Atlas_Id 57484
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 12165328 and ends at 12196144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUDT5 (10p13) / WDR90 (16p13.3)NUDT5 (10p13) / ZMYND11 (10p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NUDT5   8052
Cards
Entrez_Gene (NCBI)NUDT5  11164  nudix hydrolase 5
AliasesYSA1; YSA1H; YSAH1; hNUDT5
GeneCards (Weizmann)NUDT5
Ensembl hg19 (Hinxton)ENSG00000165609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165609 [Gene_View]  ENSG00000165609 [Sequence]  chr10:12165328-12196144 [Contig_View]  NUDT5 [Vega]
ICGC DataPortalENSG00000165609
TCGA cBioPortalNUDT5
AceView (NCBI)NUDT5
Genatlas (Paris)NUDT5
WikiGenes11164
SOURCE (Princeton)NUDT5
Genetics Home Reference (NIH)NUDT5
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT5  -     chr10:12165328-12196144 -  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT5  -     10p14   [Description]    (hg19-Feb_2009)
GoldenPathNUDT5 - 10p14 [CytoView hg19]  NUDT5 - 10p14 [CytoView hg38]
ImmunoBaseENSG00000165609
Mapping of homologs : NCBINUDT5 [Mapview hg19]  NUDT5 [Mapview hg38]
OMIM609230   
Gene and transcription
Genbank (Entrez)AF155832 AF161464 AF218818 AK123731 AK291131
RefSeq transcript (Entrez)NM_001321647 NM_001321648 NM_014142
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT5
Cluster EST : UnigeneHs.656304 [ NCBI ]
CGAP (NCI)Hs.656304
Alternative Splicing GalleryENSG00000165609
Gene ExpressionNUDT5 [ NCBI-GEO ]   NUDT5 [ EBI - ARRAY_EXPRESS ]   NUDT5 [ SEEK ]   NUDT5 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11164
GTEX Portal (Tissue expression)NUDT5
Human Protein AtlasENSG00000165609-NUDT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKK9
Splice isoforms : SwissVarQ9UKK9
PhosPhoSitePlusQ9UKK9
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)    NUDIX_BOX (PS00893)   
Domains : Interpro (EBI)Nudix_hydrolase    NUDIX_hydrolase-like_dom_sf    NUDIX_hydrolase_CS    NUDIX_hydrolase_dom   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT5
DMDM Disease mutations11164
Blocks (Seattle)NUDT5
PDB (RSDB)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR   
PDB Europe2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR   
PDB (PDBSum)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR   
PDB (IMB)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR   
Structural Biology KnowledgeBase2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR   
SCOP (Structural Classification of Proteins)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR   
CATH (Classification of proteins structures)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR   
SuperfamilyQ9UKK9
Human Protein Atlas [tissue]ENSG00000165609-NUDT5 [tissue]
Peptide AtlasQ9UKK9
IPIIPI00296913   IPI00644292   IPI00646762   IPI00641064   IPI00647797   IPI00646261   IPI00984011   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKK9
IntAct (EBI)Q9UKK9
FunCoupENSG00000165609
BioGRIDNUDT5
STRING (EMBL)NUDT5
ZODIACNUDT5
Ontologies - Pathways
QuickGOQ9UKK9
Ontology : AmiGOmagnesium ion binding  protein binding  nucleus  nucleus  nucleus  cytosol  chromatin remodeling  nucleoside phosphate metabolic process  nucleotide metabolic process  ribonucleoside diphosphate catabolic process  nucleotidyltransferase activity  ADP-sugar diphosphatase activity  D-ribose catabolic process  D-ribose catabolic process  ribose phosphate metabolic process  snoRNA binding  nucleobase-containing small molecule catabolic process  protein homodimerization activity  8-oxo-dGDP phosphatase activity  ADP-ribose diphosphatase activity  ADP-ribose diphosphatase activity  ADP-ribose diphosphatase activity  m7G(5')pppN diphosphatase activity  extracellular exosome  ATP generation from poly-ADP-D-ribose  
Ontology : EGO-EBImagnesium ion binding  protein binding  nucleus  nucleus  nucleus  cytosol  chromatin remodeling  nucleoside phosphate metabolic process  nucleotide metabolic process  ribonucleoside diphosphate catabolic process  nucleotidyltransferase activity  ADP-sugar diphosphatase activity  D-ribose catabolic process  D-ribose catabolic process  ribose phosphate metabolic process  snoRNA binding  nucleobase-containing small molecule catabolic process  protein homodimerization activity  8-oxo-dGDP phosphatase activity  ADP-ribose diphosphatase activity  ADP-ribose diphosphatase activity  ADP-ribose diphosphatase activity  m7G(5')pppN diphosphatase activity  extracellular exosome  ATP generation from poly-ADP-D-ribose  
Pathways : KEGGPurine metabolism   
NDEx NetworkNUDT5
Atlas of Cancer Signalling NetworkNUDT5
Wikipedia pathwaysNUDT5
Orthology - Evolution
OrthoDB11164
GeneTree (enSembl)ENSG00000165609
Phylogenetic Trees/Animal Genes : TreeFamNUDT5
HOGENOMQ9UKK9
Homologs : HomoloGeneNUDT5
Homology/Alignments : Family Browser (UCSC)NUDT5
Gene fusions - Rearrangements
Fusion : QuiverNUDT5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT5
dbVarNUDT5
ClinVarNUDT5
1000_GenomesNUDT5 
Exome Variant ServerNUDT5
ExAC (Exome Aggregation Consortium)ENSG00000165609
GNOMAD BrowserENSG00000165609
Varsome BrowserNUDT5
Genetic variants : HAPMAP11164
Genomic Variants (DGV)NUDT5 [DGVbeta]
DECIPHERNUDT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT5 
Mutations
ICGC Data PortalNUDT5 
TCGA Data PortalNUDT5 
Broad Tumor PortalNUDT5
OASIS PortalNUDT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNUDT5
Mutations and Diseases : HGMDNUDT5
BioMutasearch NUDT5
DgiDB (Drug Gene Interaction Database)NUDT5
DoCM (Curated mutations)NUDT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT5 (select a term)
intoGenNUDT5
Cancer3DNUDT5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609230   
Orphanet
DisGeNETNUDT5
MedgenNUDT5
Genetic Testing Registry NUDT5
NextProtQ9UKK9 [Medical]
TSGene11164
GENETestsNUDT5
Target ValidationNUDT5
Huge Navigator NUDT5 [HugePedia]
snp3D : Map Gene to Disease11164
BioCentury BCIQNUDT5
ClinGenNUDT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11164
Chemical/Pharm GKB GenePA31838
Clinical trialNUDT5
Miscellaneous
canSAR (ICR)NUDT5 (select the gene name)
DataMed IndexNUDT5
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT5
EVEXNUDT5
GoPubMedNUDT5
iHOPNUDT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:58:51 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.