Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NUPL2 (-)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 11097
Atlas_Id 47390
Location -  [Link to chromosome band ]
Location_base_pair Starts at 23181827 and ends at 23201011 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPNMB (7p15.3) / NUPL2 (7p15.3)NUPL2 (7p15.3) / HMGCS1 (5p12)NUPL2 (7p15.3) / SET (9q34.11)
NUPL2 (7p15.3) / SUN1 (7p22.3)NUPL2 (7p15.3) / TMC8 (17q25.3)PACSIN2 (22q13.2) / NUPL2 (7p15.3)
GPNMB 7p15.3 / NUPL2 7p15.3PACSIN2 22q13.2 / NUPL2 7p15.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  GPNMB/NUPL2 (7p15)
t(7;22)(p15;q13) PACSIN2/NUPL2


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)NUPL2  11097  -
Aliases
GeneCards (Weizmann)NUPL2
Ensembl hg19 (Hinxton)ENSG00000136243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136243 [Gene_View]  ENSG00000136243 [Sequence]  chr7:23181827-23201011 [Contig_View]  NUPL2 [Vega]
ICGC DataPortalENSG00000136243
TCGA cBioPortalNUPL2
AceView (NCBI)NUPL2
Genatlas (Paris)NUPL2
WikiGenes11097
SOURCE (Princeton)NUPL2
Genetics Home Reference (NIH)NUPL2
Genomic and cartography
GoldenPath hg38 (UCSC)NUPL2  -     chr7:23181827-23201011 +  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUPL2  -     -   [Description]    (hg19-Feb_2009)
GoldenPathNUPL2 - - [CytoView hg19]  NUPL2 - - [CytoView hg38]
ImmunoBaseENSG00000136243
Mapping of homologs : NCBINUPL2 [Mapview hg19]  NUPL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUPL2
Alternative Splicing GalleryENSG00000136243
Gene ExpressionNUPL2 [ NCBI-GEO ]   NUPL2 [ EBI - ARRAY_EXPRESS ]   NUPL2 [ SEEK ]   NUPL2 [ MEM ]
Gene Expression Viewer (FireBrowse)NUPL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)11097
GTEX Portal (Tissue expression)NUPL2
Human Protein AtlasENSG00000136243-NUPL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NUPL2
DMDM Disease mutations11097
Blocks (Seattle)NUPL2
Human Protein Atlas [tissue]ENSG00000136243-NUPL2 [tissue]
HPRD14855
IPIIPI00187080   IPI00010654   IPI00477209   IPI00916170   IPI00915940   IPI00916695   
Protein Interaction databases
FunCoupENSG00000136243
BioGRIDNUPL2
STRING (EMBL)NUPL2
ZODIACNUPL2
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease11097
BioCentury BCIQNUPL2
ClinGenNUPL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11097
Clinical trialNUPL2
Miscellaneous
canSAR (ICR)NUPL2 (select the gene name)
DataMed IndexNUPL2
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUPL2
EVEXNUPL2
GoPubMedNUPL2
iHOPNUPL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:58:54 CET 2019

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