Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCLNP1 (OCLN pseudogene 1)

Identity

Other alias-
HGNC (Hugo) OCLNP1
LocusID (NCBI) 647859
Atlas_Id 80510
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 71074203 and ends at 71093070 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OCLNP1   53916
Cards
Entrez_Gene (NCBI)OCLNP1  647859  OCLN pseudogene 1
Aliases
GeneCards (Weizmann)OCLNP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:71074203-71093070 [Contig_View]  OCLNP1 [Vega]
TCGA cBioPortalOCLNP1
AceView (NCBI)OCLNP1
Genatlas (Paris)OCLNP1
WikiGenes647859
SOURCE (Princeton)OCLNP1
Genetics Home Reference (NIH)OCLNP1
Genomic and cartography
GoldenPath hg38 (UCSC)OCLNP1  -     chr5:71074203-71093070 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCLNP1  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathOCLNP1 - 5q13.2 [CytoView hg19]  OCLNP1 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBIOCLNP1 [Mapview hg19]  OCLNP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DC407815
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OCLNP1
Gene ExpressionOCLNP1 [ NCBI-GEO ]   OCLNP1 [ EBI - ARRAY_EXPRESS ]   OCLNP1 [ SEEK ]   OCLNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)OCLNP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)647859
GTEX Portal (Tissue expression)OCLNP1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OCLNP1
DMDM Disease mutations647859
Blocks (Seattle)OCLNP1
Protein Interaction databases
BioGRIDOCLNP1
STRING (EMBL)OCLNP1
ZODIACOCLNP1
Ontologies - Pathways
Huge Navigator OCLNP1 [HugePedia]
snp3D : Map Gene to Disease647859
BioCentury BCIQOCLNP1
ClinGenOCLNP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647859
Clinical trialOCLNP1
Miscellaneous
canSAR (ICR)OCLNP1 (select the gene name)
HarmonizomeOCLNP1
DataMed IndexOCLNP1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOCLNP1
EVEXOCLNP1
GoPubMedOCLNP1
iHOPOCLNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Mar 11 20:20:46 CET 2020

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