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OSTC (oligosaccharyltransferase complex non-catalytic subunit)

Identity

Alias_namesoligosaccharyltransferase complex subunit
Alias_symbol (synonym)DC2
Other alias
HGNC (Hugo) OSTC
LocusID (NCBI) 58505
Atlas_Id 40268
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 108650599 and ends at 108667820 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OSTC (4q25) / DDOST (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OSTC   24448
Cards
Entrez_Gene (NCBI)OSTC  58505  oligosaccharyltransferase complex non-catalytic subunit
AliasesDC2
GeneCards (Weizmann)OSTC
Ensembl hg19 (Hinxton)ENSG00000198856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198856 [Gene_View]  ENSG00000198856 [Sequence]  chr4:108650599-108667820 [Contig_View]  OSTC [Vega]
ICGC DataPortalENSG00000198856
TCGA cBioPortalOSTC
AceView (NCBI)OSTC
Genatlas (Paris)OSTC
WikiGenes58505
SOURCE (Princeton)OSTC
Genetics Home Reference (NIH)OSTC
Genomic and cartography
GoldenPath hg38 (UCSC)OSTC  -     chr4:108650599-108667820 +  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OSTC  -     4q25   [Description]    (hg19-Feb_2009)
GoldenPathOSTC - 4q25 [CytoView hg19]  OSTC - 4q25 [CytoView hg38]
ImmunoBaseENSG00000198856
Mapping of homologs : NCBIOSTC [Mapview hg19]  OSTC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF068297 AF161425 AF201937 AF343342 AK312185
RefSeq transcript (Entrez)NM_001267817 NM_001267818 NM_021227
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OSTC
Alternative Splicing GalleryENSG00000198856
Gene ExpressionOSTC [ NCBI-GEO ]   OSTC [ EBI - ARRAY_EXPRESS ]   OSTC [ SEEK ]   OSTC [ MEM ]
Gene Expression Viewer (FireBrowse)OSTC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58505
GTEX Portal (Tissue expression)OSTC
Human Protein AtlasENSG00000198856-OSTC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRP0
Splice isoforms : SwissVarQ9NRP0
PhosPhoSitePlusQ9NRP0
Domains : Interpro (EBI)OligosaccharylTrfase_OST3/OST6    OSTC   
Domain families : Pfam (Sanger)OST3_OST6 (PF04756)   
Domain families : Pfam (NCBI)pfam04756   
Conserved Domain (NCBI)OSTC
DMDM Disease mutations58505
Blocks (Seattle)OSTC
PDB (RSDB)6S7O   
PDB Europe6S7O   
PDB (PDBSum)6S7O   
PDB (IMB)6S7O   
Structural Biology KnowledgeBase6S7O   
SCOP (Structural Classification of Proteins)6S7O   
CATH (Classification of proteins structures)6S7O   
SuperfamilyQ9NRP0
Human Protein Atlas [tissue]ENSG00000198856-OSTC [tissue]
Peptide AtlasQ9NRP0
HPRD13120
IPIIPI00183603   IPI00038550   IPI00968228   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRP0
IntAct (EBI)Q9NRP0
FunCoupENSG00000198856
BioGRIDOSTC
STRING (EMBL)OSTC
ZODIACOSTC
Ontologies - Pathways
QuickGOQ9NRP0
Ontology : AmiGOdolichyl-diphosphooligosaccharide-protein glycotransferase activity  protein binding  oligosaccharyltransferase complex  oligosaccharyltransferase complex  integral component of membrane  protein N-linked glycosylation via asparagine  
Ontology : EGO-EBIdolichyl-diphosphooligosaccharide-protein glycotransferase activity  protein binding  oligosaccharyltransferase complex  oligosaccharyltransferase complex  integral component of membrane  protein N-linked glycosylation via asparagine  
NDEx NetworkOSTC
Atlas of Cancer Signalling NetworkOSTC
Wikipedia pathwaysOSTC
Orthology - Evolution
OrthoDB58505
GeneTree (enSembl)ENSG00000198856
Phylogenetic Trees/Animal Genes : TreeFamOSTC
HOGENOMQ9NRP0
Homologs : HomoloGeneOSTC
Homology/Alignments : Family Browser (UCSC)OSTC
Gene fusions - Rearrangements
Fusion : QuiverOSTC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOSTC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OSTC
dbVarOSTC
ClinVarOSTC
1000_GenomesOSTC 
Exome Variant ServerOSTC
ExAC (Exome Aggregation Consortium)ENSG00000198856
GNOMAD BrowserENSG00000198856
Varsome BrowserOSTC
Genetic variants : HAPMAP58505
Genomic Variants (DGV)OSTC [DGVbeta]
DECIPHEROSTC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOSTC 
Mutations
ICGC Data PortalOSTC 
TCGA Data PortalOSTC 
Broad Tumor PortalOSTC
OASIS PortalOSTC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOSTC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOSTC
Mutations and Diseases : HGMDOSTC
BioMutasearch OSTC
DgiDB (Drug Gene Interaction Database)OSTC
DoCM (Curated mutations)OSTC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OSTC (select a term)
intoGenOSTC
Cancer3DOSTC(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOSTC
MedgenOSTC
Genetic Testing Registry OSTC
NextProtQ9NRP0 [Medical]
TSGene58505
GENETestsOSTC
Target ValidationOSTC
Huge Navigator OSTC [HugePedia]
snp3D : Map Gene to Disease58505
BioCentury BCIQOSTC
ClinGenOSTC
Clinical trials, drugs, therapy
Protein Interactions : CTD58505
Pharm GKB GenePA164724280
Clinical trialOSTC
Miscellaneous
canSAR (ICR)OSTC (select the gene name)
HarmonizomeOSTC
DataMed IndexOSTC
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOSTC
EVEXOSTC
GoPubMedOSTC
iHOPOSTC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Jun 30 20:26:00 CEST 2020
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