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OTOAP1 (OTOA pseudogene 1)

Identity

Other alias-
HGNC (Hugo) OTOAP1
LocusID (NCBI) 653786
Atlas_Id 80660
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 22545698 and ends at 22576865 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OTOAP1   53869
Cards
Entrez_Gene (NCBI)OTOAP1  653786  OTOA pseudogene 1
Aliases
GeneCards (Weizmann)OTOAP1
Ensembl hg19 (Hinxton)ENSG00000257838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257838 [Gene_View]  ENSG00000257838 [Sequence]  chr16:22545698-22576865 [Contig_View]  OTOAP1 [Vega]
ICGC DataPortalENSG00000257838
TCGA cBioPortalOTOAP1
AceView (NCBI)OTOAP1
Genatlas (Paris)OTOAP1
WikiGenes653786
SOURCE (Princeton)OTOAP1
Genetics Home Reference (NIH)OTOAP1
Genomic and cartography
GoldenPath hg38 (UCSC)OTOAP1  -     chr16:22545698-22576865 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTOAP1  -     16p12.2   [Description]    (hg19-Feb_2009)
GoldenPathOTOAP1 - 16p12.2 [CytoView hg19]  OTOAP1 - 16p12.2 [CytoView hg38]
ImmunoBaseENSG00000257838
genome Data Viewer NCBIOTOAP1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK092323
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTOAP1
Alternative Splicing GalleryENSG00000257838
Gene ExpressionOTOAP1 [ NCBI-GEO ]   OTOAP1 [ EBI - ARRAY_EXPRESS ]   OTOAP1 [ SEEK ]   OTOAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)OTOAP1 [ Firebrowse - Broad ]
GenevisibleExpression of OTOAP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653786
GTEX Portal (Tissue expression)OTOAP1
Human Protein AtlasENSG00000257838-OTOAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OTOAP1
DMDM Disease mutations653786
Blocks (Seattle)OTOAP1
Human Protein Atlas [tissue]ENSG00000257838-OTOAP1 [tissue]
Protein Interaction databases
FunCoupENSG00000257838
BioGRIDOTOAP1
STRING (EMBL)OTOAP1
ZODIACOTOAP1
Ontologies - Pathways
Huge Navigator OTOAP1 [HugePedia]
snp3D : Map Gene to Disease653786
BioCentury BCIQOTOAP1
ClinGenOTOAP1
Clinical trials, drugs, therapy
Protein Interactions : CTD653786
Clinical trialOTOAP1
Miscellaneous
canSAR (ICR)OTOAP1 (select the gene name)
HarmonizomeOTOAP1
DataMed IndexOTOAP1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTOAP1
EVEXOTOAP1
GoPubMedOTOAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jul 10 20:30:20 CEST 2020

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