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OTULINL (OTU deubiquitinase with linear linkage specificity like)

Identity

Other aliasFAM105A
NET20
HGNC (Hugo) OTULINL
LocusID (NCBI) 54491
Atlas_Id 80316
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 14581782 and ends at 14616178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OTULINL   25629
Cards
Entrez_Gene (NCBI)OTULINL  54491  OTU deubiquitinase with linear linkage specificity like
AliasesFAM105A; NET20
GeneCards (Weizmann)OTULINL
Ensembl hg19 (Hinxton)ENSG00000145569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145569 [Gene_View]  ENSG00000145569 [Sequence]  chr5:14581782-14616178 [Contig_View]  OTULINL [Vega]
ICGC DataPortalENSG00000145569
TCGA cBioPortalOTULINL
AceView (NCBI)OTULINL
Genatlas (Paris)OTULINL
WikiGenes54491
SOURCE (Princeton)OTULINL
Genetics Home Reference (NIH)OTULINL
Genomic and cartography
GoldenPath hg38 (UCSC)OTULINL  -     chr5:14581782-14616178 +  5p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTULINL  -     5p15.2   [Description]    (hg19-Feb_2009)
GoldenPathOTULINL - 5p15.2 [CytoView hg19]  OTULINL - 5p15.2 [CytoView hg38]
ImmunoBaseENSG00000145569
Mapping of homologs : NCBIOTULINL [Mapview hg19]  OTULINL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF052146 AK001989 AK125648 AK222731 AL512750
RefSeq transcript (Entrez)NM_019018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTULINL
Cluster EST : UnigeneHs.155085 [ NCBI ]
CGAP (NCI)Hs.155085
Alternative Splicing GalleryENSG00000145569
Gene ExpressionOTULINL [ NCBI-GEO ]   OTULINL [ EBI - ARRAY_EXPRESS ]   OTULINL [ SEEK ]   OTULINL [ MEM ]
Gene Expression Viewer (FireBrowse)OTULINL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54491
GTEX Portal (Tissue expression)OTULINL
Human Protein AtlasENSG00000145569-OTULINL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUU6
Splice isoforms : SwissVarQ9NUU6
PhosPhoSitePlusQ9NUU6
Domains : Interpro (EBI)FAM105    FAM105A   
Domain families : Pfam (Sanger)Peptidase_C101 (PF16218)   
Domain families : Pfam (NCBI)pfam16218   
Conserved Domain (NCBI)OTULINL
DMDM Disease mutations54491
Blocks (Seattle)OTULINL
SuperfamilyQ9NUU6
Human Protein Atlas [tissue]ENSG00000145569-OTULINL [tissue]
Peptide AtlasQ9NUU6
IPIIPI00004563   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUU6
IntAct (EBI)Q9NUU6
FunCoupENSG00000145569
BioGRIDOTULINL
STRING (EMBL)OTULINL
ZODIACOTULINL
Ontologies - Pathways
QuickGOQ9NUU6
Ontology : AmiGOnuclear envelope  cytoplasm  protein deubiquitination  ubiquitin-like protein-specific protease activity  extrinsic component of endoplasmic reticulum membrane  ubiquitin binding  
Ontology : EGO-EBInuclear envelope  cytoplasm  protein deubiquitination  ubiquitin-like protein-specific protease activity  extrinsic component of endoplasmic reticulum membrane  ubiquitin binding  
NDEx NetworkOTULINL
Atlas of Cancer Signalling NetworkOTULINL
Wikipedia pathwaysOTULINL
Orthology - Evolution
OrthoDB54491
GeneTree (enSembl)ENSG00000145569
Phylogenetic Trees/Animal Genes : TreeFamOTULINL
HOGENOMQ9NUU6
Homologs : HomoloGeneOTULINL
Homology/Alignments : Family Browser (UCSC)OTULINL
Gene fusions - Rearrangements
Fusion : QuiverOTULINL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTULINL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTULINL
dbVarOTULINL
ClinVarOTULINL
1000_GenomesOTULINL 
Exome Variant ServerOTULINL
ExAC (Exome Aggregation Consortium)ENSG00000145569
GNOMAD BrowserENSG00000145569
Varsome BrowserOTULINL
Genetic variants : HAPMAP54491
Genomic Variants (DGV)OTULINL [DGVbeta]
DECIPHEROTULINL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTULINL 
Mutations
ICGC Data PortalOTULINL 
TCGA Data PortalOTULINL 
Broad Tumor PortalOTULINL
OASIS PortalOTULINL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOTULINL
BioMutasearch OTULINL
DgiDB (Drug Gene Interaction Database)OTULINL
DoCM (Curated mutations)OTULINL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTULINL (select a term)
intoGenOTULINL
Cancer3DOTULINL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOTULINL
MedgenOTULINL
Genetic Testing Registry OTULINL
NextProtQ9NUU6 [Medical]
TSGene54491
GENETestsOTULINL
Target ValidationOTULINL
Huge Navigator OTULINL [HugePedia]
snp3D : Map Gene to Disease54491
BioCentury BCIQOTULINL
ClinGenOTULINL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54491
Chemical/Pharm GKB GenePA142671788
Clinical trialOTULINL
Miscellaneous
canSAR (ICR)OTULINL (select the gene name)
DataMed IndexOTULINL
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTULINL
EVEXOTULINL
GoPubMedOTULINL
iHOPOTULINL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:00:07 CEST 2019

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