Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PCA3 (prostate cancer associated 3)

Identity

Alias_namesprostate cancer antigen 3
prostate cancer antigen 3 (non-protein coding)
prostate cancer associated 3 (non-protein coding)
Alias_symbol (synonym)DD3
NCRNA00019
PCAT3
PRUNE2-AS1
Other alias
HGNC (Hugo) PCA3
LocusID (NCBI) 50652
Atlas_Id 41653
Location 9q21.2  [Link to chromosome band 9q21]
Location_base_pair Starts at 76764436 and ends at 76787569 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCA3   8637
Cards
Entrez_Gene (NCBI)PCA3  50652  prostate cancer associated 3
AliasesDD3; NCRNA00019; PCAT3; PRUNE2-AS1
GeneCards (Weizmann)PCA3
Ensembl hg19 (Hinxton)ENSG00000225937 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225937 [Gene_View]  ENSG00000225937 [Sequence]  chr9:76764436-76787569 [Contig_View]  PCA3 [Vega]
ICGC DataPortalENSG00000225937
TCGA cBioPortalPCA3
AceView (NCBI)PCA3
Genatlas (Paris)PCA3
WikiGenes50652
SOURCE (Princeton)PCA3
Genetics Home Reference (NIH)PCA3
Genomic and cartography
GoldenPath hg38 (UCSC)PCA3  -     chr9:76764436-76787569 +  9q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCA3  -     9q21.2   [Description]    (hg19-Feb_2009)
GoldenPathPCA3 - 9q21.2 [CytoView hg19]  PCA3 - 9q21.2 [CytoView hg38]
ImmunoBaseENSG00000225937
Mapping of homologs : NCBIPCA3 [Mapview hg19]  PCA3 [Mapview hg38]
OMIM604845   
Gene and transcription
Genbank (Entrez)AF103907 AY894120 DQ374660 DQ374661
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCA3
Cluster EST : UnigeneHs.663766 [ NCBI ]
CGAP (NCI)Hs.663766
Alternative Splicing GalleryENSG00000225937
Gene ExpressionPCA3 [ NCBI-GEO ]   PCA3 [ EBI - ARRAY_EXPRESS ]   PCA3 [ SEEK ]   PCA3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)50652
GTEX Portal (Tissue expression)PCA3
Human Protein AtlasENSG00000225937-PCA3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCA3
DMDM Disease mutations50652
Blocks (Seattle)PCA3
Human Protein Atlas [tissue]ENSG00000225937-PCA3 [tissue]
Protein Interaction databases
FunCoupENSG00000225937
BioGRIDPCA3
STRING (EMBL)PCA3
ZODIACPCA3
Ontologies - Pathways
Huge Navigator PCA3 [HugePedia]
snp3D : Map Gene to Disease50652
BioCentury BCIQPCA3
ClinGenPCA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50652
Chemical/Pharm GKB GenePA32976
Clinical trialPCA3
Miscellaneous
canSAR (ICR)PCA3 (select the gene name)
DataMed IndexPCA3
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCA3
EVEXPCA3
GoPubMedPCA3
iHOPPCA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:59:54 CET 2019
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