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PCDHGA5 (protocadherin gamma subfamily A, 5)

Identity

Other namesCDH-GAMMA-A5
ME3
PCDH-GAMMA-A5
HGNC (Hugo) PCDHGA5
LocusID (NCBI) 56110
Location 5q31.3
Location_base_pair Starts at 140743898 and ends at 140892546 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCDHGA5   8703
Entrez_Gene (NCBI)PCDHGA5  56110  protocadherin gamma subfamily A, 5
Cards
GeneCards (Weizmann)PCDHGA5
Ensembl (Hinxton)ENSG00000253485 [Gene_View]  chr5:140743898-140892546 [Contig_View]  PCDHGA5 [Vega]
AceView (NCBI)PCDHGA5
Genatlas (Paris)PCDHGA5
SOURCE (Stanford)NM_018918 NM_032054
Genomic and cartography
GoldenPath (UCSC)PCDHGA5  -  5q31.3   chr5:140743898-140892546 +  5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHGA5 - 5q31.3 [CytoView]
Mapping of homologs : NCBIPCDHGA5 [Mapview]
OMIM606292   
Gene and transcription
Genbank (Entrez)AF152325 AF152512 BC104926 BC113460 D88796
RefSeq transcript (SRS)NM_018918 NM_032054
RefSeq transcript (Entrez)NM_018918 NM_032054
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NG_000012 NT_029289 NW_001838953 NW_004078025
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NG_000012 NT_029289 NW_001838953 NW_004078025
Consensus coding sequences : CCDS (NCBI)PCDHGA5
Cluster EST : UnigeneHs.368160 [ SRS ] Hs.368160 [ NCBI ]
CGAP (NCI)Hs.368160
Alternative Splicing : Fast-db (Paris)GSHG0024318
Alternative Splicing GalleryENSG00000253485
Gene ExpressionPCDHGA5 [ NCBI-GEO ]   PCDHGA5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5G8 (SRS) Q9Y5G8 (Uniprot)
NextProtQ9Y5G8
With graphics : InterProQ9Y5G8
Splice isoforms : SwissVarQ9Y5G8(Swissvar)
Domaine pattern : Prosite (SRS)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (SRS)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Related proteins : CluSTrQ9Y5G8
Domain families : Pfam (SRS)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
DMDM56110
Blocks (Seattle)Q9Y5G8
Human Protein AtlasENSG00000253485
HPRD09382
IPIIPI00003885   IPI00012523   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5G8
IntAct (EBI)Q9Y5G8
FunCoupENSG00000253485
REACTOMEPCDHGA5
Protein Interaction Database56110
BioGRIDPCDHGA5
InParanoidQ9Y5G8
Interologous Interaction database Q9Y5G8
IntegromeDBPCDHGA5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PCDHGA5
SNP (GeneSNP Utah)PCDHGA5
SNP : HGBasePCDHGA5
Genetic variants : HAPMAPPCDHGA5
Somatic Mutations in Cancer : COSMICPCDHGA5 
CONAN: Copy Number AnalysisPCDHGA5 
Mutations and Diseases : HGMDPCDHGA5
OMIM606292   
GENETests606292   
Disease Genetic AssociationPCDHGA5
Huge Navigator PCDHGA5 [HugePedia]  PCDHGA5 [HugeCancerGEM]
Genomic VariantsPCDHGA5  PCDHGA5 [DGVbeta]
snp3D : Map Gene to Disease56110
General knowledge
Homologs : HomoloGenePCDHGA5
Homology/Alignments : Family Browser (UCSC)PCDHGA5
Phylogenetic Trees/Animal Genes : TreeFamPCDHGA5
Chemical/Protein Interactions : CTD56110
Chemical/Pharm GKB GenePA33051
Clinical trialPCDHGA5
Cancer Resource (Charite)ENSG00000253485
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion  integral to membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion  integral to membrane  
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
PubGenePCDHGA5
iHOPPCDHGA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:54 CEST 2013
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