PDLIM1 (PDZ and LIM domain 1)

2015-06-01  

Identity

HGNC
PDLIM1
LOCATION
10q23.33
LOCUSID
9124
ALIAS
CLIM1,CLP-36,CLP36,HEL-S-112,hCLIM1
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 9124
MIM: 605900
HGNC: 2067
Ensembl: ENSG00000107438

Variants:

dbSNP: 9124
ClinVar: 9124
TCGA: ENSG00000107438
COSMIC: PDLIM1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000107438ENST00000329399O00151
ENSG00000107438ENST00000329399V9HW92

Expression (GTEx)

0
50
100
150
200
250
300
350
400
450
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
163854512006A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease.69
111106972000Human CLP36, a PDZ-domain and LIM-domain protein, binds to alpha-actinin-1 and associates with actin filaments and stress fibers in activated platelets and endothelial cells.30
267018042016PDLIM1 Stabilizes the E-Cadherin/β-Catenin Complex to Prevent Epithelial-Mesenchymal Transition and Metastatic Potential of Colorectal Cancer Cells.28
119733482002Clik1: a novel kinase targeted to actin stress fibers by the CLP-36 PDZ-LIM protein.21
172138422007Refined genomic localization and ethnic differences observed for the IBD5 association with Crohn's disease.19
108618532000Interaction of hCLIM1, an enigma family protein, with alpha-actinin 2.14
246628362015PDZ and LIM domain protein 1(PDLIM1)/CLP36 promotes breast cancer cell migration, invasion and metastasis through interaction with α-actinin.14
216518302012Parent-of-origin effects of FAS and PDLIM1 in attention-deficit/hyperactivity disorder.6
216807392011Alpha-actinin-4 and CLP36 protein deficiencies contribute to podocyte defects in multiple human glomerulopathies.6
228510372012Robust co-regulation of tyrosine phosphorylation sites on proteins reveals novel protein interactions.6

Citation

Dessen P

PDLIM1 (PDZ and LIM domain 1)

Atlas Genet Cytogenet Oncol Haematol. 2015-06-01

Online version: http://atlasgeneticsoncology.org/gene/55262/pdlim1