PDZRN4 (PDZ domain containing ring finger 4)

2007-04-01  

Identity

HGNC
PDZRN4
LOCATION
12q12
LOCUSID
29951
ALIAS
LNX4,SAMCAP3L
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 29951
MIM: 609730
HGNC: 30552
Ensembl: ENSG00000165966

Variants:

dbSNP: 29951
ClinVar: 29951
TCGA: ENSG00000165966
COSMIC: PDZRN4

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000165966ENST00000298919Q6ZMN7
ENSG00000165966ENST00000402685Q6ZMN7
ENSG00000165966ENST00000539469Q6ZMN7
ENSG00000165966ENST00000649474A0A3B3ISS2

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
264861042015PDZRN4 acts as a suppressor of cell proliferation in human liver cancer cell lines.9
264861042015PDZRN4 acts as a suppressor of cell proliferation in human liver cancer cell lines.9
209446572011Replication of top markers of a genome-wide association study in multiple sclerosis in Spain.12
209446572011Replication of top markers of a genome-wide association study in multiple sclerosis in Spain.12

Citation

Dessen P

PDZRN4 (PDZ domain containing ring finger 4)

Atlas Genet Cytogenet Oncol Haematol. 2007-04-01

Online version: http://atlasgeneticsoncology.org/gene/47446/pdzrn4