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PHETA2 (PH domain containing endocytic trafficking adaptor 2)

Identity

Other aliasFAM109B
IPIP27B
Ses2
HGNC (Hugo) PHETA2
LocusID (NCBI) 150368
Atlas_Id 80323
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 42074251 and ends at 42079438 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PHETA2   27161
Cards
Entrez_Gene (NCBI)PHETA2  150368  PH domain containing endocytic trafficking adaptor 2
AliasesFAM109B; IPIP27B; Ses2
GeneCards (Weizmann)PHETA2
Ensembl hg19 (Hinxton)ENSG00000177096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177096 [Gene_View]  ENSG00000177096 [Sequence]  chr22:42074251-42079438 [Contig_View]  PHETA2 [Vega]
ICGC DataPortalENSG00000177096
TCGA cBioPortalPHETA2
AceView (NCBI)PHETA2
Genatlas (Paris)PHETA2
WikiGenes150368
SOURCE (Princeton)PHETA2
Genetics Home Reference (NIH)PHETA2
Genomic and cartography
GoldenPath hg38 (UCSC)PHETA2  -     chr22:42074251-42079438 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHETA2  -     22q13.2   [Description]    (hg19-Feb_2009)
GoldenPathPHETA2 - 22q13.2 [CytoView hg19]  PHETA2 - 22q13.2 [CytoView hg38]
ImmunoBaseENSG00000177096
Mapping of homologs : NCBIPHETA2 [Mapview hg19]  PHETA2 [Mapview hg38]
OMIM614240   
Gene and transcription
Genbank (Entrez)BC029776 BC104175 BC104176 BX648402 CR456454
RefSeq transcript (Entrez)NM_001002034
RefSeq genomic (Entrez)NC_000022 NT_187682 NW_003315971 NW_004504305
Consensus coding sequences : CCDS (NCBI)PHETA2
Cluster EST : UnigeneHs.368312 [ NCBI ]
CGAP (NCI)Hs.368312
Alternative Splicing GalleryENSG00000177096
Gene ExpressionPHETA2 [ NCBI-GEO ]   PHETA2 [ EBI - ARRAY_EXPRESS ]   PHETA2 [ SEEK ]   PHETA2 [ MEM ]
Gene Expression Viewer (FireBrowse)PHETA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150368
GTEX Portal (Tissue expression)PHETA2
Human Protein AtlasENSG00000177096-PHETA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ICB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ICB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ICB4
Splice isoforms : SwissVarQ6ICB4
PhosPhoSitePlusQ6ICB4
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)PH-like_dom_sf    PH_domain   
Domain families : Pfam (Sanger)PH (PF00169)   
Domain families : Pfam (NCBI)pfam00169   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)PHETA2
DMDM Disease mutations150368
Blocks (Seattle)PHETA2
SuperfamilyQ6ICB4
Human Protein Atlas [tissue]ENSG00000177096-PHETA2 [tissue]
Peptide AtlasQ6ICB4
IPIIPI00297381   IPI00893834   
Protein Interaction databases
DIP (DOE-UCLA)Q6ICB4
IntAct (EBI)Q6ICB4
FunCoupENSG00000177096
BioGRIDPHETA2
STRING (EMBL)PHETA2
ZODIACPHETA2
Ontologies - Pathways
QuickGOQ6ICB4
Ontology : AmiGOreceptor recycling  receptor recycling  protein binding  early endosome  early endosome  trans-Golgi network  trans-Golgi network  cytosol  endosome organization  endosome organization  clathrin-coated vesicle  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  protein homodimerization activity  recycling endosome  recycling endosome  
Ontology : EGO-EBIreceptor recycling  receptor recycling  protein binding  early endosome  early endosome  trans-Golgi network  trans-Golgi network  cytosol  endosome organization  endosome organization  clathrin-coated vesicle  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  protein homodimerization activity  recycling endosome  recycling endosome  
NDEx NetworkPHETA2
Atlas of Cancer Signalling NetworkPHETA2
Wikipedia pathwaysPHETA2
Orthology - Evolution
OrthoDB150368
GeneTree (enSembl)ENSG00000177096
Phylogenetic Trees/Animal Genes : TreeFamPHETA2
HOGENOMQ6ICB4
Homologs : HomoloGenePHETA2
Homology/Alignments : Family Browser (UCSC)PHETA2
Gene fusions - Rearrangements
Fusion : QuiverPHETA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHETA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHETA2
dbVarPHETA2
ClinVarPHETA2
1000_GenomesPHETA2 
Exome Variant ServerPHETA2
ExAC (Exome Aggregation Consortium)ENSG00000177096
GNOMAD BrowserENSG00000177096
Varsome BrowserPHETA2
Genetic variants : HAPMAP150368
Genomic Variants (DGV)PHETA2 [DGVbeta]
DECIPHERPHETA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHETA2 
Mutations
ICGC Data PortalPHETA2 
TCGA Data PortalPHETA2 
Broad Tumor PortalPHETA2
OASIS PortalPHETA2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPHETA2
BioMutasearch PHETA2
DgiDB (Drug Gene Interaction Database)PHETA2
DoCM (Curated mutations)PHETA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHETA2 (select a term)
intoGenPHETA2
Cancer3DPHETA2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614240   
Orphanet
DisGeNETPHETA2
MedgenPHETA2
Genetic Testing Registry PHETA2
NextProtQ6ICB4 [Medical]
TSGene150368
GENETestsPHETA2
Target ValidationPHETA2
Huge Navigator PHETA2 [HugePedia]
snp3D : Map Gene to Disease150368
BioCentury BCIQPHETA2
ClinGenPHETA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150368
Chemical/Pharm GKB GenePA143485467
Clinical trialPHETA2
Miscellaneous
canSAR (ICR)PHETA2 (select the gene name)
DataMed IndexPHETA2
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHETA2
EVEXPHETA2
GoPubMedPHETA2
iHOPPHETA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 7 17:42:54 CEST 2019

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