Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PHF11 (PHD finger protein 11)

Identity

Alias_symbol (synonym)NY-REN-34
BCAP
IGER
Other aliasAPY
IGEL
IGHER
NYREN34
HGNC (Hugo) PHF11
LocusID (NCBI) 51131
Atlas_Id 41703
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49497056 and ends at 49528991 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM107B (10p13) / PHF11 (13q14.2)FNDC3A (13q14.2) / PHF11 (13q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PHF11   17024
Cards
Entrez_Gene (NCBI)PHF11  51131  PHD finger protein 11
AliasesAPY; BCAP; IGEL; IGER; 
IGHER; NY-REN-34; NYREN34
GeneCards (Weizmann)PHF11
Ensembl hg19 (Hinxton)ENSG00000136147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136147 [Gene_View]  ENSG00000136147 [Sequence]  chr13:49497056-49528991 [Contig_View]  PHF11 [Vega]
ICGC DataPortalENSG00000136147
TCGA cBioPortalPHF11
AceView (NCBI)PHF11
Genatlas (Paris)PHF11
WikiGenes51131
SOURCE (Princeton)PHF11
Genetics Home Reference (NIH)PHF11
Genomic and cartography
GoldenPath hg38 (UCSC)PHF11  -     chr13:49497056-49528991 +  13q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF11  -     13q14.2   [Description]    (hg19-Feb_2009)
GoldenPathPHF11 - 13q14.2 [CytoView hg19]  PHF11 - 13q14.2 [CytoView hg38]
ImmunoBaseENSG00000136147
Mapping of homologs : NCBIPHF11 [Mapview hg19]  PHF11 [Mapview hg38]
OMIM607796   
Gene and transcription
Genbank (Entrez)AA765949 AB011031 AF155105 AK026228 AK225986
RefSeq transcript (Entrez)NM_001040443 NM_001040444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF11
Cluster EST : UnigeneHs.369039 [ NCBI ]
CGAP (NCI)Hs.369039
Alternative Splicing GalleryENSG00000136147
Gene ExpressionPHF11 [ NCBI-GEO ]   PHF11 [ EBI - ARRAY_EXPRESS ]   PHF11 [ SEEK ]   PHF11 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51131
GTEX Portal (Tissue expression)PHF11
Human Protein AtlasENSG00000136147-PHF11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIL8
Splice isoforms : SwissVarQ9UIL8
PhosPhoSitePlusQ9UIL8
Domaine pattern : Prosite (Expaxy)EPHD (PS51805)   
Domains : Interpro (EBI)EPHD    Znf_FYVE_PHD    Znf_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)PHF11
DMDM Disease mutations51131
Blocks (Seattle)PHF11
SuperfamilyQ9UIL8
Human Protein Atlas [tissue]ENSG00000136147-PHF11 [tissue]
Peptide AtlasQ9UIL8
IPIIPI00328598   IPI00479948   IPI00843903   IPI00947156   IPI01012013   IPI00945704   IPI00945182   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIL8
IntAct (EBI)Q9UIL8
FunCoupENSG00000136147
BioGRIDPHF11
STRING (EMBL)PHF11
ZODIACPHF11
Ontologies - Pathways
QuickGOQ9UIL8
Ontology : AmiGOnucleoplasm  nuclear membrane  metal ion binding  
Ontology : EGO-EBInucleoplasm  nuclear membrane  metal ion binding  
NDEx NetworkPHF11
Atlas of Cancer Signalling NetworkPHF11
Wikipedia pathwaysPHF11
Orthology - Evolution
OrthoDB51131
GeneTree (enSembl)ENSG00000136147
Phylogenetic Trees/Animal Genes : TreeFamPHF11
HOGENOMQ9UIL8
Homologs : HomoloGenePHF11
Homology/Alignments : Family Browser (UCSC)PHF11
Gene fusions - Rearrangements
Fusion : QuiverPHF11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF11
dbVarPHF11
ClinVarPHF11
1000_GenomesPHF11 
Exome Variant ServerPHF11
ExAC (Exome Aggregation Consortium)ENSG00000136147
GNOMAD BrowserENSG00000136147
Varsome BrowserPHF11
Genetic variants : HAPMAP51131
Genomic Variants (DGV)PHF11 [DGVbeta]
DECIPHERPHF11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF11 
Mutations
ICGC Data PortalPHF11 
TCGA Data PortalPHF11 
Broad Tumor PortalPHF11
OASIS PortalPHF11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPHF11
Mutations and Diseases : HGMDPHF11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF11
DgiDB (Drug Gene Interaction Database)PHF11
DoCM (Curated mutations)PHF11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF11 (select a term)
intoGenPHF11
Cancer3DPHF11(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607796   
Orphanet
DisGeNETPHF11
MedgenPHF11
Genetic Testing Registry PHF11
NextProtQ9UIL8 [Medical]
TSGene51131
GENETestsPHF11
Target ValidationPHF11
Huge Navigator PHF11 [HugePedia]
snp3D : Map Gene to Disease51131
BioCentury BCIQPHF11
ClinGenPHF11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51131
Chemical/Pharm GKB GenePA134947696
Clinical trialPHF11
Miscellaneous
canSAR (ICR)PHF11 (select the gene name)
DataMed IndexPHF11
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF11
EVEXPHF11
GoPubMedPHF11
iHOPPHF11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:00:38 CET 2019
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