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PHF19 (PHD finger protein 19)

Identity

Alias (NCBI)MTF2L1
PCL3
TDRD19B
HGNC (Hugo) PHF19
HGNC Alias symbDKFZP727G051
PCL3
MTF2L1
TDRD19B
HGNC Alias namepolycomb-like 3
 tudor domain containing 19B
LocusID (NCBI) 26147
Atlas_Id 46423
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 120855651 and ends at 120877188 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIRA (22q11.21) / PHF19 (9q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PHF19   24566
Cards
Entrez_Gene (NCBI)PHF19  26147  PHD finger protein 19
AliasesMTF2L1; PCL3; TDRD19B
GeneCards (Weizmann)PHF19
Ensembl hg19 (Hinxton)ENSG00000119403 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119403 [Gene_View]  ENSG00000119403 [Sequence]  chr9:120855651-120877188 [Contig_View]  PHF19 [Vega]
ICGC DataPortalENSG00000119403
TCGA cBioPortalPHF19
AceView (NCBI)PHF19
Genatlas (Paris)PHF19
WikiGenes26147
SOURCE (Princeton)PHF19
Genetics Home Reference (NIH)PHF19
Genomic and cartography
GoldenPath hg38 (UCSC)PHF19  -     chr9:120855651-120877188 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PHF19  -     9q33.2   [Description]    (hg19-Feb_2009)
GoldenPathPHF19 - 9q33.2 [CytoView hg19]  PHF19 - 9q33.2 [CytoView hg38]
ImmunoBaseENSG00000119403
genome Data Viewer NCBIPHF19 [Mapview hg19]  
OMIM609740   
Gene and transcription
Genbank (Entrez)AA743545 AI193743 AI369987 AK122744 AK302996
RefSeq transcript (Entrez)NM_001009936 NM_001286840 NM_001286842 NM_001286843 NM_015651
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PHF19
Alternative Splicing GalleryENSG00000119403
Gene ExpressionPHF19 [ NCBI-GEO ]   PHF19 [ EBI - ARRAY_EXPRESS ]   PHF19 [ SEEK ]   PHF19 [ MEM ]
Gene Expression Viewer (FireBrowse)PHF19 [ Firebrowse - Broad ]
GenevisibleExpression of PHF19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26147
GTEX Portal (Tissue expression)PHF19
Human Protein AtlasENSG00000119403-PHF19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6S3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6S3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6S3
Splice isoforms : SwissVarQ5T6S3
PhosPhoSitePlusQ5T6S3
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)   
Domains : Interpro (EBI)KDM4_Tudor_2    Mtf2_C_dom    PHF19_PHD2    Tudor    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Mtf2_C (PF14061)    PHD (PF00628)    Tudor_2 (PF18104)   
Domain families : Pfam (NCBI)pfam14061    pfam00628    pfam18104   
Domain families : Smart (EMBL)PHD (SM00249)  TUDOR (SM00333)  
Conserved Domain (NCBI)PHF19
DMDM Disease mutations26147
Blocks (Seattle)PHF19
PDB (RSDB)2E5Q    4BD3   
PDB Europe2E5Q    4BD3   
PDB (PDBSum)2E5Q    4BD3   
PDB (IMB)2E5Q    4BD3   
Structural Biology KnowledgeBase2E5Q    4BD3   
SCOP (Structural Classification of Proteins)2E5Q    4BD3   
CATH (Classification of proteins structures)2E5Q    4BD3   
SuperfamilyQ5T6S3
Human Protein Atlas [tissue]ENSG00000119403-PHF19 [tissue]
Peptide AtlasQ5T6S3
HPRD17846
IPIIPI00152220   IPI00743344   IPI00879928   IPI00877885   IPI00157837   IPI00880080   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6S3
IntAct (EBI)Q5T6S3
FunCoupENSG00000119403
BioGRIDPHF19
STRING (EMBL)PHF19
ZODIACPHF19
Ontologies - Pathways
QuickGOQ5T6S3
Ontology : AmiGODNA binding  chromatin binding  protein binding  nucleus  nucleoplasm  chromatin organization  regulation of transcription, DNA-templated  methylated histone binding  methylated histone binding  ESC/E(Z) complex  ESC/E(Z) complex  negative regulation of gene expression, epigenetic  metal ion binding  positive regulation of histone H3-K27 methylation  
Ontology : EGO-EBIDNA binding  chromatin binding  protein binding  nucleus  nucleoplasm  chromatin organization  regulation of transcription, DNA-templated  methylated histone binding  methylated histone binding  ESC/E(Z) complex  ESC/E(Z) complex  negative regulation of gene expression, epigenetic  metal ion binding  positive regulation of histone H3-K27 methylation  
NDEx NetworkPHF19
Atlas of Cancer Signalling NetworkPHF19
Wikipedia pathwaysPHF19
Orthology - Evolution
OrthoDB26147
GeneTree (enSembl)ENSG00000119403
Phylogenetic Trees/Animal Genes : TreeFamPHF19
HOGENOMQ5T6S3
Homologs : HomoloGenePHF19
Homology/Alignments : Family Browser (UCSC)PHF19
Gene fusions - Rearrangements
Fusion : QuiverPHF19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPHF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PHF19
dbVarPHF19
ClinVarPHF19
1000_GenomesPHF19 
Exome Variant ServerPHF19
GNOMAD BrowserENSG00000119403
Varsome BrowserPHF19
Genetic variants : HAPMAP26147
Genomic Variants (DGV)PHF19 [DGVbeta]
DECIPHERPHF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPHF19 
Mutations
ICGC Data PortalPHF19 
TCGA Data PortalPHF19 
Broad Tumor PortalPHF19
OASIS PortalPHF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPHF19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPHF19
Mutations and Diseases : HGMDPHF19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PHF19
DgiDB (Drug Gene Interaction Database)PHF19
DoCM (Curated mutations)PHF19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PHF19 (select a term)
intoGenPHF19
Cancer3DPHF19(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609740   
Orphanet
DisGeNETPHF19
MedgenPHF19
Genetic Testing Registry PHF19
NextProtQ5T6S3 [Medical]
TSGene26147
GENETestsPHF19
Target ValidationPHF19
Huge Navigator PHF19 [HugePedia]
snp3D : Map Gene to Disease26147
BioCentury BCIQPHF19
ClinGenPHF19
Clinical trials, drugs, therapy
Protein Interactions : CTD26147
Pharm GKB GenePA134911501
Clinical trialPHF19
Miscellaneous
canSAR (ICR)PHF19 (select the gene name)
HarmonizomePHF19
DataMed IndexPHF19
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePHF19
EVEXPHF19
GoPubMedPHF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:29:37 CEST 2020

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