PHF23 (PHD finger protein 23)

2014-08-01  

Identity

HGNC
PHF23
LOCATION
17p13.1
LOCUSID
79142
ALIAS
hJUNE-1b
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 79142
MIM: 612910
HGNC: 28428
Ensembl: ENSG00000040633

Variants:

dbSNP: 79142
ClinVar: 79142
TCGA: ENSG00000040633
COSMIC: PHF23

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000040633ENST00000320316Q9BUL5
ENSG00000040633ENST00000454255Q9BUL5
ENSG00000040633ENST00000570899I3L0Y2
ENSG00000040633ENST00000571362Q9BUL5
ENSG00000040633ENST00000572789I3L410
ENSG00000040633ENST00000573826I3L4Q4
ENSG00000040633ENST00000574236I3L0X3
ENSG00000040633ENST00000574323I3L2W6
ENSG00000040633ENST00000576955I3L1N0
ENSG00000040633ENST00000613632A0A087WVQ2

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45
50
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
254840982014PHF23 (plant homeodomain finger protein 23) negatively regulates cell autophagy by promoting ubiquitination and degradation of E3 ligase LRSAM1.7

Citation

Dessen P

PHF23 (PHD finger protein 23)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54534/phf23