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POTED (POTE ankyrin domain family member D)

Identity

Alias (NCBI)A26B3
ANKRD21
CT104.1
POTE
POTE-21
POTE21
HGNC (Hugo) POTED
HGNC Alias symbPOTE
POTE-21
POTE21
CT104.1
HGNC Alias namecancer/testis antigen family 104, member 1
HGNC Previous nameANKRD21
 A26B3
HGNC Previous nameankyrin repeat domain 21
 ANKRD26-like family B, member 3
 POTE ankyrin domain family, member D
LocusID (NCBI) 317754
Atlas_Id 72084
Location 21q11.2  [Link to chromosome band 21q11]
Location_base_pair Starts at 13610177 and ends at 13641585 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)POTED   23822
Cards
Entrez_Gene (NCBI)POTED  317754  POTE ankyrin domain family member D
AliasesA26B3; ANKRD21; CT104.1; POTE; 
POTE-21; POTE21
GeneCards (Weizmann)POTED
Ensembl hg19 (Hinxton)ENSG00000166351 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166351 [Gene_View]  ENSG00000166351 [Sequence]  chr21:13610177-13641585 [Contig_View]  POTED [Vega]
ICGC DataPortalENSG00000166351
TCGA cBioPortalPOTED
AceView (NCBI)POTED
Genatlas (Paris)POTED
WikiGenes317754
SOURCE (Princeton)POTED
Genetics Home Reference (NIH)POTED
Genomic and cartography
GoldenPath hg38 (UCSC)POTED  -     chr21:13610177-13641585 +  21q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)POTED  -     21q11.2   [Description]    (hg19-Feb_2009)
GoldenPathPOTED - 21q11.2 [CytoView hg19]  POTED - 21q11.2 [CytoView hg38]
ImmunoBaseENSG00000166351
genome Data Viewer NCBIPOTED [Mapview hg19]  
OMIM607549   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_174981
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)POTED
Alternative Splicing GalleryENSG00000166351
Gene ExpressionPOTED [ NCBI-GEO ]   POTED [ EBI - ARRAY_EXPRESS ]   POTED [ SEEK ]   POTED [ MEM ]
Gene Expression Viewer (FireBrowse)POTED [ Firebrowse - Broad ]
GenevisibleExpression of POTED in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317754
GTEX Portal (Tissue expression)POTED
Human Protein AtlasENSG00000166351-POTED [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YR6
Splice isoforms : SwissVarQ86YR6
PhosPhoSitePlusQ86YR6
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    CC144C-like_CC_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    CCDC144C (PF14915)   
Domain families : Pfam (NCBI)pfam12796    pfam14915   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)POTED
DMDM Disease mutations317754
Blocks (Seattle)POTED
SuperfamilyQ86YR6
Human Protein Atlas [tissue]ENSG00000166351-POTED [tissue]
Peptide AtlasQ86YR6
HPRD09612
IPIIPI00953961   
Protein Interaction databases
DIP (DOE-UCLA)Q86YR6
IntAct (EBI)Q86YR6
FunCoupENSG00000166351
BioGRIDPOTED
STRING (EMBL)POTED
ZODIACPOTED
Ontologies - Pathways
QuickGOQ86YR6
Ontology : AmiGOplasma membrane  
Ontology : EGO-EBIplasma membrane  
NDEx NetworkPOTED
Atlas of Cancer Signalling NetworkPOTED
Wikipedia pathwaysPOTED
Orthology - Evolution
OrthoDB317754
GeneTree (enSembl)ENSG00000166351
Phylogenetic Trees/Animal Genes : TreeFamPOTED
HOGENOMQ86YR6
Homologs : HomoloGenePOTED
Homology/Alignments : Family Browser (UCSC)POTED
Gene fusions - Rearrangements
Fusion : QuiverPOTED
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPOTED [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)POTED
dbVarPOTED
ClinVarPOTED
1000_GenomesPOTED 
Exome Variant ServerPOTED
GNOMAD BrowserENSG00000166351
Varsome BrowserPOTED
Genetic variants : HAPMAP317754
Genomic Variants (DGV)POTED [DGVbeta]
DECIPHERPOTED [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPOTED 
Mutations
ICGC Data PortalPOTED 
TCGA Data PortalPOTED 
Broad Tumor PortalPOTED
OASIS PortalPOTED [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPOTED  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPOTED
Mutations and Diseases : HGMDPOTED
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch POTED
DgiDB (Drug Gene Interaction Database)POTED
DoCM (Curated mutations)POTED (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)POTED (select a term)
intoGenPOTED
Cancer3DPOTED(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607549   
Orphanet
DisGeNETPOTED
MedgenPOTED
Genetic Testing Registry POTED
NextProtQ86YR6 [Medical]
TSGene317754
GENETestsPOTED
Target ValidationPOTED
Huge Navigator POTED [HugePedia]
snp3D : Map Gene to Disease317754
BioCentury BCIQPOTED
ClinGenPOTED
Clinical trials, drugs, therapy
Protein Interactions : CTD317754
Pharm GKB GenePA164724756
Clinical trialPOTED
Miscellaneous
canSAR (ICR)POTED (select the gene name)
HarmonizomePOTED
DataMed IndexPOTED
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePOTED
EVEXPOTED
GoPubMedPOTED
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:23:40 CEST 2020

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