Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PPP1R3D (protein phosphatase 1 regulatory subunit 3D)

Identity

Alias (NCBI)PPP1R6
HGNC (Hugo) PPP1R3D
HGNC Previous namePPP1R6
HGNC Previous nameprotein phosphatase 1, regulatory (inhibitor) subunit 3D
 protein phosphatase 1, regulatory subunit 3D
LocusID (NCBI) 5509
Atlas_Id 46774
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 59936663 and ends at 59940305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PPP1R3D   9294
Cards
Entrez_Gene (NCBI)PPP1R3D    protein phosphatase 1 regulatory subunit 3D
AliasesPPP1R6
GeneCards (Weizmann)PPP1R3D
Ensembl hg19 (Hinxton)ENSG00000132825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132825 [Gene_View]  ENSG00000132825 [Sequence]  chr20:59936663-59940305 [Contig_View]  PPP1R3D [Vega]
ICGC DataPortalENSG00000132825
TCGA cBioPortalPPP1R3D
AceView (NCBI)PPP1R3D
Genatlas (Paris)PPP1R3D
SOURCE (Princeton)PPP1R3D
Genetics Home Reference (NIH)PPP1R3D
Genomic and cartography
GoldenPath hg38 (UCSC)PPP1R3D  -     chr20:59936663-59940305 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PPP1R3D  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathPPP1R3D - 20q13.33 [CytoView hg19]  PPP1R3D - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000132825
genome Data Viewer NCBIPPP1R3D [Mapview hg19]  
OMIM603326   
Gene and transcription
Genbank (Entrez)BC047502 BC074860 BC074861 BX647298 Y18206
RefSeq transcript (Entrez)NM_006242
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PPP1R3D
Alternative Splicing GalleryENSG00000132825
Gene ExpressionPPP1R3D [ NCBI-GEO ]   PPP1R3D [ EBI - ARRAY_EXPRESS ]   PPP1R3D [ SEEK ]   PPP1R3D [ MEM ]
Gene Expression Viewer (FireBrowse)PPP1R3D [ Firebrowse - Broad ]
GenevisibleExpression of PPP1R3D in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5509
GTEX Portal (Tissue expression)PPP1R3D
Human Protein AtlasENSG00000132825-PPP1R3D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95685   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95685  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95685
Splice isoforms : SwissVarO95685
PhosPhoSitePlusO95685
Domaine pattern : Prosite (Expaxy)CBM21 (PS51159)   
Domains : Interpro (EBI)CBM21_dom    CBM21_dom_sf    Pase-1_reg-su_3B/C/D_met   
Domain families : Pfam (Sanger)CBM_21 (PF03370)   
Domain families : Pfam (NCBI)pfam03370   
Conserved Domain (NCBI)PPP1R3D
Blocks (Seattle)PPP1R3D
SuperfamilyO95685
Human Protein Atlas [tissue]ENSG00000132825-PPP1R3D [tissue]
Peptide AtlasO95685
HPRD04507
IPIIPI00006682   
Protein Interaction databases
DIP (DOE-UCLA)O95685
IntAct (EBI)O95685
BioGRIDPPP1R3D
STRING (EMBL)PPP1R3D
ZODIACPPP1R3D
Ontologies - Pathways
QuickGOO95685
Ontology : AmiGOprotein phosphatase type 1 complex  protein serine/threonine phosphatase activity  protein binding  glycogen metabolic process  regulation of glycogen biosynthetic process  regulation of glycogen catabolic process  protein dephosphorylation  protein phosphatase 1 binding  glycogen granule  intracellular membrane-bounded organelle  glycogen binding  
Ontology : EGO-EBIprotein phosphatase type 1 complex  protein serine/threonine phosphatase activity  protein binding  glycogen metabolic process  regulation of glycogen biosynthetic process  regulation of glycogen catabolic process  protein dephosphorylation  protein phosphatase 1 binding  glycogen granule  intracellular membrane-bounded organelle  glycogen binding  
Pathways : KEGGInsulin signaling pathway   
NDEx NetworkPPP1R3D
Atlas of Cancer Signalling NetworkPPP1R3D
Wikipedia pathwaysPPP1R3D
Orthology - Evolution
OrthoDB5509
GeneTree (enSembl)ENSG00000132825
Phylogenetic Trees/Animal Genes : TreeFamPPP1R3D
HOGENOMO95685
Homologs : HomoloGenePPP1R3D
Homology/Alignments : Family Browser (UCSC)PPP1R3D
Gene fusions - Rearrangements
Fusion : QuiverPPP1R3D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPPP1R3D [hg38]
dbVarPPP1R3D
ClinVarPPP1R3D
MonarchPPP1R3D
1000_GenomesPPP1R3D 
Exome Variant ServerPPP1R3D
GNOMAD BrowserENSG00000132825
Varsome BrowserPPP1R3D
Genomic Variants (DGV)PPP1R3D [DGVbeta]
DECIPHERPPP1R3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPPP1R3D 
Mutations
ICGC Data PortalPPP1R3D 
TCGA Data PortalPPP1R3D 
Broad Tumor PortalPPP1R3D
OASIS PortalPPP1R3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPPP1R3D  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPPP1R3D
Mutations and Diseases : HGMDPPP1R3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PPP1R3D
DgiDB (Drug Gene Interaction Database)PPP1R3D
DoCM (Curated mutations)PPP1R3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PPP1R3D (select a term)
intoGenPPP1R3D
Cancer3DPPP1R3D(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603326   
Orphanet
DisGeNETPPP1R3D
MedgenPPP1R3D
Genetic Testing Registry PPP1R3D
NextProtO95685 [Medical]
GENETestsPPP1R3D
Target ValidationPPP1R3D
Huge Navigator PPP1R3D [HugePedia]
ClinGenPPP1R3D
Clinical trials, drugs, therapy
MyCancerGenomePPP1R3D
Protein Interactions : CTD
Pharm GKB GenePA33654
PharosO95685
Clinical trialPPP1R3D
Miscellaneous
canSAR (ICR)PPP1R3D (select the gene name)
HarmonizomePPP1R3D
DataMed IndexPPP1R3D
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPPP1R3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:40:39 CET 2021
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